Job Description P77698 Confidence 33.66% Date Thu Jan 5 12:31:47 GMT 2012 Rank 101 Aligned Residues 109 % Identity 18% Template c2gajA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form Resolution 1.95 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.											.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.														.
Query Sequence		R	S	L	N	A	I	A	K	Y	L	N	D	H	A	V	K	N	F	S	G	K	E	S	A	W	G	P	S	V	I	E	K	L	L	A	N	K	A	L	I	G	I	C	V	P	S	Y	R	A	R	G	K	G	I	S	E	.	.	.	.	.	.	.	.	.	.	I	A	G	Y	Y	P	R	V	I	S	D	D	L	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.														.
Alig confidence																					.	.	.	.	.	.																		.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.														.
Template Conservation																					.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		Y	T	E	G	S	L	V	K	E	M	E	R	L	G	I	G	R	P	S	.	.	.	.	.	.	T	Y	A	S	T	I	K	L	L	L	N	R	G	Y	I	K	K	.	.	.	.	.	.	.	I	R	G	Y	L	Y	P	T	I	V	G	S	V	V	M	D	Y	L	E	K	K	Y	S	D	V	V	S	V	S	F	T
Template Known Secondary structure															T		S		T	T	.	.	.	.	.	.	T											T	T	S				.	.	.	.	.	.	.		T	T					B														S	T	T	T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.							.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480								.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
				277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.														.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	F	Y	A	V	Q	E	I	R	L	A	P	F	G	I	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	K	N	P	M	L	I	N	L	L	R	T	V	M	K	C	E	A	C	G	N	T	M	I	V	H	A	V	S	G	S	L	H	G	Y	Y	V	C	P
Query Conservation		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																			.															.	.
Template Conservation																																																			.															.	.
Template Sequence		A	E	M	E	K	D	L	D	E	V	E	Q	G	K	K	T	D	K	I	V	L	R	E	F	Y	E	S	F	S	S	V	F	D	R	N	D	R	I	V	V	D	F	P	T	N	Q	K	C	S	.	C	G	K	E	M	R	L	S	F	G	K	Y	G	F	.	.	Y	L	K	C	E
Template Known Secondary structure													T	T	S	S																			T	T														S	.	S	S									T	T			.	.					S
Template Predicted Secondary structure																																																			.															.	.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560		.	.	.	.	.	.	.	.	.	570	.	.	.	.			.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions