Job Description P50465 Confidence 96.11% Date Thu Jan 5 12:04:46 GMT 2012 Rank 33 Aligned Residues 168 % Identity 19% Template c3doaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:fibrinogen binding protein; PDBTitle: the crystal structure of the fibrinogen binding protein from2 staphylococcus aureus Resolution 2.81 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																																				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	R	R	A	A	D	N	L	E	A	A	I	K	G	K	P	L	T	D	V	W	F	A	F	P	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	Y	Q	S	Q	L	I	G	Q	H	V	T	H	V	E	T
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		F	T	K	K	M	V	E	S	L	Q	F	.	L	T	T	G	R	V	H	K	I	N	Q	P	D	N	D	T	I	L	M	V	V	R	Q	N	R	Q	N	H	Q	L	L	L	S	I	H	P	N	F	S	R	L	Q	L	T	T	K	P	P	M	F	A	R	V	F	R	K	H	L	E	G	G	I	I	E	S	I	K	Q
Template Known Secondary structure											G	G	.	G	T	T											T	T									T	T											T	T	T																					T	T
Template Predicted Secondary structure													.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		51	.	.	.			.	.	.	.	.	60	.									.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.								.	.	.	.	.	.	.	.												.
Query SS confidence						.	.								.	.	.	.	.	.	.	.												.
Query Sequence		R	G	K	A	.	.	L	L	T	H	F	S	N	.	.	.	.	.	.	.	.	D	L	T	L	Y	S	H	N	Q	L	Y	.	G	V	W	R	V	V	D	T	G	E	E	P	Q	T	T	R	V	L	R	V	K	L	Q	T	A	D	K	T	I	L	L	Y	S	A	S	D	I	E	M	L	T	P	E	Q	L	T	T
Query Conservation						.	.								.	.	.	.	.	.	.	.												.
Alig confidence						.	.								.	.	.	.	.	.	.	.												.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	N	D	R	R	I	E	I	D	I	K	S	K	D	E	I	G	D	T	I	Y	R	T	V	I	L	E	I	M	G	K	H	S	N	L	I	L	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	K	I	I	E	G	F	K	H	L	T	P	R	T	V	M	P	G	F	N	Y	E
Template Known Secondary structure		S	T	T	S	S											T	T	S													G	G	G								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		B					S	S		B					B	S	T	T	S	B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	F	L	Q	R	V	G	P	D	V	L	D	P	N	L	T	P	E	V	V	K	E	R	L	L	S	P	R	F	R	N	R	Q	F	A	G	L	L	L	D	Q	A	F	L	A	G	L	G	N	Y	L	R	V	E	I	L	W	Q	V	G	L	T	G	N	H	K	A	K	D	L	N	A	A	Q	L	D	A	L	A
Query Conservation
Alig confidence								.						.	.												.	.	.															.	.																									.	.	.	.
Template Conservation								.						.	.												.	.	.															.	.																									.	.	.	.
Template Sequence		A	P	P	T	Q	H	.	K	I	N	P	Y	.	.	D	I	T	G	A	E	V	L	K	Y	I	.	.	.	D	F	N	A	G	N	I	A	K	Q	L	L	N	Q	.	.	F	E	G	F	S	P	L	I	T	N	E	I	V	S	R	R	Q	F	M	T	S	S	T	L	.	.	.	.	P	E	A	F	D	E	V	M
Template Known Secondary structure								.		B		G	G	.	.	G							G	G	G		.	.	.		G	G	G											.	.	B	T	T											T	T	S	S	S		S	T	T			.	.	.	.
Template Predicted Secondary structure								.						.	.												.	.	.															.	.																									.	.	.	.
Template SS confidence
		162	.	.	.	.	.		.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.
		200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions