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Job DescriptionP50465
Confidence100.00%DateThu Jan 5 12:04:46 GMT 2012
Rank7Aligned Residues238
% Identity22%Templatec1tdhA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:nei endonuclease viii-like 1; PDBTitle: crystal structure of human endonuclease viii-like 1 (neil1)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30... ......40.........50.........60 .........70.
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Query Sequence  PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQL. KPYQSQLIGQHVTHVETRGKALLTHFS. . . . . . . . . NDLTLYSHNQL
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Template Sequence  PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQEPLALVFRFGM
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Query Sequence  YGVWRVVDTGEEPQTTRVLRVKLQT. ADKTILLYSA. . . . SDIEMLTPEQLTTHPFLQRVGPDVLDP. . NLTPEVVKERL
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Template Sequence  SGSFQLVPREELP. RHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGG. . . . . . . KWQPGRGPCVLQEYQQFRESVLRNLA
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Query Sequence  LSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAA. . . . . . . . . . . . . . . QLDALAHALLEIPRFS
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Template Sequence  D. . KAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQPELTLSQKIRTKLQNPDLLELCHSVPKEV
Template Known Secondary structure  S..GGGGSBTT
TTTSTT

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TTSBGGG


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   154 .....160.........170.........180.........190.........200.........210.........220.........230.
 
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Query Sequence  YATRGQVDENKHH. . . . GALFR. FKVFHRDGEPCERCGSIIEKTTLSSRPFYW
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Template Sequence  VQLGGRGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDR. . . . . . . . HGRTIWF
Template Known Secondary structure  TT
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   237..240.........250.........260.........270.... .....280.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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