Job Description P50465 Confidence 100.00% Date Thu Jan 5 12:04:46 GMT 2012 Rank 3 Aligned Residues 255 % Identity 24% Template c1nnjA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		E	G	P	E	I	R	R	A	A	D	N	L	E	A	A	I	K	G	K	P	L	T	D	V	W	F	A	F	P	Q	L	.	.	.	.	.	K	P	Y	Q	S	Q	L	I	G	Q	H	V	T	H	V	E	T	R	G	K	A	L	L	T	H	F	S	N	D	L	T	L	Y	S	H	N	Q	L	Y	G	V	W	R	V
Query Conservation																																	.	.	.	.	.
Alig confidence																																	.	.	.	.	.
Template Conservation
Template Sequence		E	L	P	E	V	E	T	V	R	R	E	L	E	K	R	I	V	G	Q	K	I	I	S	I	E	A	T	Y	P	R	M	V	L	T	G	F	E	Q	L	K	K	E	L	T	G	K	T	I	Q	G	I	S	R	R	G	K	Y	L	I	F	E	I	G	D	D	F	R	L	I	S	H	L	R	M	E	G	K	Y	R	L
Template Known Secondary structure																		T	T		B							S		G	G	G	B	T	T										T	T		B								T	T							T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		V	D	T	G	E	E	P	Q	T	T	R	V	L	R	V	K	L	Q	T	A	D	K	T	I	L	L	Y	S	A	.	.	.	S	D	I	E	M	L	T	P	E	Q	L	T	T	H	P	F	L	Q	R	V	G	P	D	V	L	D	P	N	L	T	P	E	V	V	K	E	R	L	L	S	P	R	F	R	N	R	Q	F
Query Conservation																															.	.	.
Alig confidence													.	.																	.	.	.																																							.	.	.
Template Conservation													.	.																																																										.	.	.
Template Sequence		A	T	L	D	A	P	R	E	K	H	D	.	.	H	L	T	M	K	F	A	D	G	Q	L	I	Y	A	D	V	R	K	F	G	T	W	E	L	I	S	T	D	Q	V	L	P	Y	F	L	K	K	K	I	G	P	E	P	T	Y	E	D	F	D	E	K	L	F	R	E	K	L	.	.	.	R	K	S	T	K	K	I
Template Known Secondary structure				T	T					T	T		.	.							S	S								T	T										G	G	G									T					S	S	T	T	T											.	.	.		T			S	B
Template Predicted Secondary structure													.	.																																																										.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		A	G	L	L	L	D	Q	A	F	L	A	G	L	G	N	Y	L	R	V	E	I	L	W	Q	V	G	L	T	G	N	H	K	A	K	D	L	N	A	A	Q	L	D	A	L	A	H	A	L	L	E	I	P	R	F	S	Y	A	T	R	G	Q	V	D	E	N	K	H	H	G	A	L	F	.	R	F	K	V	F	H	R
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		K	P	Y	L	L	E	Q	T	L	V	A	G	L	G	N	I	Y	V	D	E	V	L	W	L	A	K	I	H	P	E	K	E	T	N	Q	L	I	E	S	S	I	H	L	L	H	D	S	I	I	E	I	L	Q	K	A	I	K	L	G	G	S	S	I	A	L	G	S	T	G	K	M	Q	N	E	L	Q	V	Y	G	K
Template Known Secondary structure							T	S	S	S	S	S														T	T			T	T		B	G	G	G																							T	T						T	T	T	T			G	G	G	S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	E	P	C	E	R	C	G	S	I	I	E	K	T	T	L	S	S	R	P	F	Y	W	C	P	G	C	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	E	K	C	S	R	C	G	A	E	I	Q	K	I	K	V	A	G	R	G	T	H	F	C	P	V	C	Q
Template Known Secondary structure		T	T	S	B		T	T	T			B							T	T							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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