Job Description P50465 Confidence 100.00% Date Thu Jan 5 12:04:46 GMT 2012 Rank 4 Aligned Residues 253 % Identity 24% Template c1k82D_ PDB info PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		P	E	G	P	E	I	R	R	A	A	D	N	L	E	A	A	I	K	G	K	P	L	T	D	V	W	F	A	F	P	Q	L	.	.	.	.	K	P	Y	Q	S	Q	L	I	G	Q	H	V	T	H	V	E	T	R	G	K	A	L	L	T	H	F	S	N	D	L	T	L	Y	S	H	N	Q	L	Y	G	V	W	R	V
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.																														.
Template Conservation																																																																			.
Template Sequence		P	E	L	P	E	V	E	T	S	R	R	G	I	E	P	H	L	V	G	A	T	I	L	H	A	V	V	R	N	G	R	L	R	W	P	V	S	E	E	I	Y	R	L	S	D	Q	P	V	L	S	V	Q	R	R	A	K	Y	L	L	L	E	L	P	E	G	.	W	I	I	I	H	L	G	M	S	G	S	L	R	I
Template Known Secondary structure																			T	T									S			B	S	S	S	B							T													T	T							S	S		.							T	T	T
Template Predicted Secondary structure																																																																			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		V	D	T	G	E	E	P	Q	T	T	R	V	L	R	V	K	L	Q	T	A	D	K	T	I	L	L	Y	S	A	S	D	I	.	.	E	M	L	T	P	E	Q	L	T	T	H	P	F	L	Q	R	V	G	P	D	V	L	D	P	N	L	T	P	E	V	V	K	E	R	L	L	S	P	R	F	R	N	R	Q	F	A
Query Conservation																																		.	.
Alig confidence													.	.																				.	.																																				.	.	.
Template Conservation													.	.																																																									.	.	.
Template Sequence		L	P	E	E	L	P	P	E	K	H	D	.	.	H	V	D	L	V	M	S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	K	E	L	E	G	H	N	V	L	T	H	L	G	P	E	P	L	S	D	D	F	N	G	E	Y	L	H	Q	K	C	.	.	.	A	K	K	K	T	A	I	K
Template Known Secondary structure			S	S						T	T		.	.							T	T	S								S	S									S		S	S	S	S	T	T	T	T	T					T	T	S	T	T	S										.	.	.	T	T			S	B
Template Predicted Secondary structure													.	.																																																									.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	L	L	D	Q	A	F	L	A	G	L	G	N	Y	L	R	V	E	I	L	W	Q	V	G	L	T	G	N	H	K	A	K	D	L	N	A	A	Q	L	D	A	L	A	H	A	L	L	E	I	P	R	F	S	Y	A	T	R	G	Q	V	D	E	N	K	H	H	G	A	L	F	R	F	K	V	F	H	R	D	G
Query Conservation
Alig confidence																																																																								.	.
Template Conservation																																																																								.	.
Template Sequence		P	W	L	M	D	N	K	L	V	V	G	V	G	N	I	Y	A	S	E	S	L	F	A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	A	E	C	E	L	L	A	R	V	I	K	A	V	L	L	R	S	I	E	Q	G	G	T	T	L	K	P	G	Y	F	A	Q	E	.	.	L	Q	V	Y	G	R	K	G
Template Known Secondary structure					T		T	T	T		S	S														T			T	T	S	B	G	G	G																							T	T		B						B	G	G	G	G	.	.		S	S	T	T		T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	C	E	R	C	G	S	I	I	E	K	T	T	L	S	S	R	P	F	Y	W	C	P	G	C	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	C	R	V	C	G	T	P	I	V	A	T	K	H	A	Q	R	A	T	F	Y	C	R	Q	C	Q
Template Known Secondary structure		S	B		T	T	T			B							T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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