Job Description P39314 Confidence 7.36% Date Thu Jan 5 11:59:17 GMT 2012 Rank 11 Aligned Residues 85 % Identity 16% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.											.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	A	I	A	V	L	C	S	W	V	G	A	L	C	W	N	V	A	S	Q	L	L	P	T	V	I	L	G	P	L	I	V	F	E	T	L	A	G	L	L	Y	T	F	L	L	R	Q	Q	M	P	P	L	M	T	L	S	G	I	A	L	L	V	I	G	V	.	.	.	.	.	.	.	.	.	.	V	I	A	V
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L
Template Known Secondary structure																				T	T		S	S	S					G	G	G																T	T			B
Template Predicted Secondary structure
Template SS confidence
		873	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	K	P	E	K	P	L	T	E	S	V	S	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	D	K	E	G	K	G	L	I	E	A	T	L	D	A
Template Known Secondary structure		T	T	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		953	.	.	.	.	.	.	960	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions