Job Description P39314 Confidence 2.24% Date Thu Jan 5 11:59:17 GMT 2012 Rank 36 Aligned Residues 226 % Identity 11% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		P	V	S	T	M	I	I	G	T	L	P	V	V	I	P	V	F	A	N	L	L	Y	S	Q	R	D	G	K	L	A	W	G	K	L	A	P	A	L	I	C	I	G	I	G	L	A	C	V	N	I	A	E	L	N	H	G	L	P	.	.	.	.	D	F	D	W	A	R	Y	T	S	G	I	V	L	A	L	V	S	V
Query Conservation																																																												.	.	.	.
Alig confidence																																																												.	.	.	.
Template Conservation
Template Sequence		Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M
Template Known Secondary structure									T	T																		T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.											.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.
Query Sequence		V	C	W	A	W	Y	A	L	R	N	A	R	W	L	R	E	.	.	.	.	.	.	.	.	.	.	N	P	D	K	H	P	M	M	W	A	T	A	Q	A	L	V	T	L	P	V	S	L	I	G	Y	L	V	A	C	Y	W	L	N	T	Q	T	P	D	F	S	L	P	F	G	P	R	P	L	V	F	I	S	L	M
Query Conservation																		.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S
Template Known Secondary structure																	T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.										.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		V	A	I	A	V	L	C	S	W	V	G	A	L	C	W	N	V	A	S	Q	L	L	P	T	V	I	L	G	P	L	I	V	F	E	T	L	A	G	L	L	Y	T	F	L	L	R	Q	Q	M	P	P	.	.	.	.	.	.	.	.	.	L	M	T	L	S	G	I	A	L	L	V	I	G	V	V	I	A	V	R	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L
Template Known Secondary structure																		T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		309	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	E	K	P	L	T	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	R	S	Q	Q	L	K	S
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions