Job Description P37908 Confidence 27.41% Date Thu Jan 5 11:57:46 GMT 2012 Rank 108 Aligned Residues 93 % Identity 13% Template c3am6C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:rhodopsin-2; PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum Resolution 3.20 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	L	R	K	P	D	R	L	I	S	L	V	L	I	G	N	N	L	V	N	I	L	A	S	A	L	G	T	I	V	G	M	R	L	Y	G	D	A	G	V	A	I	A	T	G	V	L	T	F	V	V	L	V	F	A	E	V	L	P	K	T	I	A	A	L	Y	P	E	K	V	A	Y	P	S	S	F	L	L
Query Conservation
Alig confidence																																																																	.
Template Conservation																																																																	.
Template Sequence		L	I	V	M	T	K	M	G	G	V	M	I	S	W	V	I	G	A	D	I	F	M	I	V	F	G	I	L	G	A	F	E	D	E	H	K	F	K	W	V	Y	F	I	A	G	C	V	M	Q	A	V	L	T	Y	G	M	Y	N	A	T	W	K	D	.	D	K	S	P	E	Y	H	S	S	Y	V	S	L	L	V	F
Template Known Secondary structure				T	T	S																										T																															S		.
Template Predicted Secondary structure																																																																	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	L	Q	I	L	M	M	P	L	V	W	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	I	L	W	V	F	Y	P	V	V	W	A	F
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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