Job Description P37908 Confidence 99.65% Date Thu Jan 5 11:57:46 GMT 2012 Rank 62 Aligned Residues 184 % Identity 14% Template c2qlvF_ PDB info PDB header:transferase/protein binding Chain: F: PDB Molecule:nuclear protein snf4; PDBTitle: crystal structure of the heterotrimer core of the s.2 cerevisiae ampk homolog snf1 Resolution 2.60 Å

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		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		S	R	S	Q	I	S	R	R	N	Q	D	M	L	L	S	V	L	D	L	.	E	K	M	T	V	D	D	I	M	V	P	R	S	E	I	I	G	I	D	I	N	D	D	W	K	S	I	L	R	Q	L	S	H	S	P	H	G	R	I	V	L	Y	R	D	S	L	D	D	A	I	S	M	L	R	V	R	E	A	W	R
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		S	Q	E	K	V	S	I	E	Q	Q	L	A	V	E	S	I	R	K	F	L	N	S	K	T	S	Y	D	V	L	P	V	S	Y	R	L	I	V	L	D	T	S	L	L	V	K	K	S	L	N	V	L	L	Q	N	S	I	V	S	A	P	L	W	D	S	K	T	S	R	F	A	G	L	L	T	T	T	D	F	I	N
Template Known Secondary structure			T	T																			T		B	G	G	G	G	S		S	S								T	T	S	B											T	T		S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	S	E	K	K	E	F	T	K	E	T	M	L	R	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	I	Y	F	V	P	E	G	T	P	L	S	T	Q	L	V	K	F	Q	R	N	K	K	K	V	G	L	V	V	N	E	Y	G	D	I	Q	G	L	V	T	V	E	D	I	L
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	Q	Y	Y	F	S	N	P	D	K	F	E	L	V	D	K	L	Q	L	D	G	L	K	D	I	E	R	A	L	G	V	D	Q	L	D	T	A	S	I	H	P	S	R	P	L	F	E	A	C	L	K	M	L	E	S	R	S	G	R	I	P	L	I	D	Q	R	E	I	V	V	S	V	L	T	Q	Y	R	I	L
Template Known Secondary structure											S							S		B	S	T	T								S	S									B		T	T	S	B									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		E	E	I	V	G	D	F	T	T	S	M	S	P	T	L	A	E	E	.	.	V	T	P	Q	N	D	G	S	V	I	I	D	G	T	A	N	V	R	E	I	N	K	A	F
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		K	F	V	A	L	N	C	R	E	T	H	F	L	K	I	P	I	G	D	L	N	I	I	T	Q	D	N	M	K	S	C	Q	M	T	T	P	V	I	D	V	I	Q	M	L
Template Known Secondary structure									G	G	G	G	G			S	B	G	G	G	T	T	T	S	B		S	S				B		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions