Job Description P77488 Confidence 99.97% Date Thu Jan 5 12:29:48 GMT 2012 Rank 42 Aligned Residues 244 % Identity 16% Template d1umda_ SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 1.90

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.
Predicted Secondary structure																.	.	.									.									.	.	.																																									.	.
Query SS confidence																.	.	.									.									.	.	.																																									.	.
Query Sequence		L	L	P	K	E	S	L	P	K	L	C	D	E	L	.	.	.	R	R	Y	L	L	D	S	V	.	S	R	S	S	G	H	F	A	.	.	.	S	G	L	G	T	V	E	L	T	V	A	L	H	Y	V	Y	N	T	P	F	D	Q	L	I	W	D	V	G	H	Q	A	Y	P	H	K	I	L	T	G	R	.	.	R
Query Conservation																.	.	.									.									.	.	.																																									.	.
Alig confidence																.	.	.									.									.	.	.																									.	.															.	.
Template Conservation																																																															.	.
Template Sequence		D	L	E	G	E	K	L	R	R	L	Y	R	D	M	L	A	A	R	M	L	D	E	R	Y	T	I	L	I	R	T	G	K	T	S	F	I	A	P	A	A	G	H	E	A	A	Q	V	A	I	A	H	A	I	R	P	G	F	D	W	V	F	.	.	P	Y	Y	R	D	H	G	L	A	L	A	L	G	I	P	L	K
Template Known Secondary structure																															T	T	S		S						T	T												S		T	T	T	S				.	.			T	T	T								T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100						.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.				.	.
Query SS confidence										.	.	.	.	.				.	.
Query Sequence		D	K	I	G	T	I	R	Q	.	.	.	.	.	K	G	G	.	.	L	H	P	F	P	W	R	G	E	S	E	Y	D	V	L	S	V	G	H	S	S	T	S	I	S	A	G	I	G	I	A	V	A	A	E	K	E	G	K	N	R	R	T	V	C	V	I	G	D	G	A	I	T	A	G	M	A	F	E	A	M	N
Query Conservation										.	.	.	.	.				.	.
Alig confidence										.	.	.	.	.				.	.							.
Template Conservation																										.
Template Sequence		E	L	L	G	Q	M	L	A	T	K	A	D	P	N	K	G	R	Q	M	P	E	H	P	G	.	S	K	A	L	N	F	F	T	V	A	S	P	I	A	S	H	V	P	P	A	A	G	A	A	I	S	M	K	L	L	R	T	G	Q	V	A	V	C	T	F	G	D	G	A	T	S	E	G	D	W	Y	A	G	I	N
Template Known Secondary structure									T	B	T	T		T	T	T	T		S		S	S				.	B	T	T	T	T	B					S	S	T	T	T	T														T	T											T	G	G	G	G	S
Template Predicted Secondary structure																										.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		H	A	G	D	I	R	P	D	M	L	V	I	L	N	D	N	E	M	S	I	S	E	N	V	G	A	L	.	.	N	N	H	L	A	Q	L	L	S	G	K	L	Y	S	S	L	R	E	G	G	K	K	V	F	S	G	V	P	P	I	K	E	L	L	K	R	T	E	E	H	I	K	G	M	V	V	P	G	T	L	F
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		F	A	A	V	Q	G	A	P	A	V	F	I	A	E	N	N	F	Y	A	I	S	V	D	Y	R	H	Q	T	H	S	P	T	I	A	D	K	A	H	A	F	G	I	P	G	Y	L	V	D	G	M	D	V	L	A	S	Y	Y	V	V	K	E	A	V	E	R	A	R	R	G	E	G	P	S	L	V	E	L	R	V	Y
Template Known Secondary structure						T	T		S									S			T	T								S	S	S		S	G	G	G	G	G	G	T	T	S							T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	L	G	F	N	Y	I	G	P	V	D	G	H	D	V	L	G	L	I	T	T	L	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	G	P	H	S	S	A	D	D	D	S	R	Y	R	P	K	E	E	V	A	F	W	R	K
Template Known Secondary structure				S		S	S	T	T			G	G	G	T	S										T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions