Job Description P77488 Confidence 100.00% Date Thu Jan 5 12:29:48 GMT 2012 Rank 8 Aligned Residues 534 % Identity 21% Template c3m7iA_ PDB info PDB header:transferase Chain: A: PDB Molecule:transketolase; PDBTitle: crystal structure of transketolase in complex with thiamine2 diphosphate, ribose-5-phosphate(pyranose form) and3 magnesium ion Resolution 1.75 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.									.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90
Predicted Secondary structure																									.																								.	.	.	.	.	.	.	.															.	.	.
Query SS confidence																									.																								.	.	.	.	.	.	.	.															.	.	.
Query Sequence		L	P	K	E	S	L	P	K	L	C	D	E	L	R	R	Y	L	L	D	S	V	S	R	.	S	S	G	H	F	A	S	G	L	G	T	V	E	L	T	V	A	L	H	Y	V	Y	N	.	.	.	.	.	.	.	.	T	P	F	D	Q	L	I	W	D	V	G	H	Q	A	.	.	.	Y	P	H	K	I	L	T	G
Query Conservation																									.																								.	.	.	.	.	.	.	.															.	.	.
Alig confidence																									.																								.	.	.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		X	N	I	Q	I	L	Q	E	Q	A	N	T	L	R	F	L	S	A	D	X	V	Q	K	A	N	S	G	H	P	G	A	P	L	G	L	A	D	I	L	S	V	L	S	Y	H	L	K	H	N	P	K	N	P	T	W	L	N	R	D	R	L	V	F	S	G	G	H	A	S	A	L	L	Y	S	F	L	H	L	S	G
Template Known Secondary structure																										T		S																							T	T		T	T		T	T	S						S	S	G	G	G												T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		91	.				.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.												.																																								.	.	.	.	.	.	.
Query SS confidence				.	.	.												.																																								.	.	.	.	.	.	.
Query Sequence		R	R	.	.	.	D	K	I	G	T	I	R	Q	K	G	G	.	L	H	P	F	P	W	R	G	E	S	E	Y	D	V	L	S	V	G	H	S	S	T	S	I	S	A	G	I	G	I	A	V	A	A	E	K	E	G	K	.	.	.	.	.	.	.	N	R	R	T	V	C	V	I	G	D	G	A	I	T	A	G	M
Query Conservation				.	.	.												.																																								.	.	.	.	.	.	.
Alig confidence				.	.	.												.								.																																.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		Y	D	L	S	L	E	D	L	K	N	F	R	Q	L	H	S	K	T	P	G	H	P	E	I	.	S	T	L	G	V	E	I	A	T	G	P	L	G	Q	G	V	A	N	A	V	G	F	A	X	A	A	K	K	A	Q	N	L	L	G	S	D	L	I	D	H	K	I	Y	C	L	C	G	D	G	D	L	Q	E	G	I
Template Known Secondary structure			S								T	T	T		T	T		S	S		S	S			T	.	T	S	T	T			S				S	T	T																						T	T	T																S
Template Predicted Secondary structure																										.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure															.																							.
Query SS confidence															.																							.
Query Sequence		A	F	E	A	M	N	H	A	G	D	I	R	P	.	D	M	L	V	I	L	N	D	N	E	M	S	I	S	E	N	V	G	A	L	N	N	.	H	L	A	Q	L	L	S	G	K	L	Y	S	S	L	R	E	G	G	K	K	V	F	S	G	V	P	P	I	K	E	L	L	K	R	T	E	E	H	I	K	G	M	V
Query Conservation															.																							.
Alig confidence															.																							.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	E	A	C	S	L	A	G	L	H	K	L	D	N	F	I	L	I	Y	D	S	N	N	I	S	I	E	G	D	V	G	L	A	F	N	E	N	V	K	X	R	F	E	A	Q	G	F	E	V	L	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T		T	T									S			T	T			G	G	G	T												T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	G	T	L	F	E	E	L	G	F	N	Y	I	G	P	V	D	G	H	D	V	L	G	L	I	T	T	L	K	N	M	R	D	L	K	G	P	Q	F	L	H	I	M	T	K	K	G	R	G	Y	E	P	A	E	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	H	D	Y	E	E	I	N	K	A	L	E	Q	A	K	K	S	T	K	P	C	L	I	I	A	K	T	T	I	A	K	G	A	G	E	L	E	G	S	H	K	S	H	G	A	P	L	G	E	E	V	I	K	K	A	K	E	Q	A	G	F	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T														T		S	S										T	T	T	T		G	G	G	T	T		G	G	G	S	S	S															T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
																																								295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	T	F	H	A	V	P	K	F	D	P	S	S	G	C	L	P	K	S	S	G	G	L	P	S	Y	S	K	I	F	G	D	W	L	C	E	T	A	A	K	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	I	S	F	H	I	P	Q	A	S	K	I	R	F	E	S	A	V	E	L	G	D	L	E	E	A	K	W	K	D	K	L	E	K	S	A	K	K	E	L	L	E	R	L	L	N	P	D	F	N	K	I	A	Y	P	D	F	K	G	K	D	L	A	T	R	D	S	N	G	E	I	L	N	V	L	A	K	N	L
Template Known Secondary structure		T	T			S																																T	T									S				T	T							T	T			B
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure															.	.																																				.
Query SS confidence															.	.																																				.
Query Sequence		N	K	L	M	A	I	T	P	A	M	R	E	G	.	.	S	G	M	V	E	F	S	R	K	F	P	D	R	Y	F	D	V	A	I	A	E	Q	H	A	V	T	F	A	A	G	L	A	I	G	G	.	Y	K	P	I	V	A	I	Y	S	T	F	L	Q	R	A	Y	D	Q	V	L	H	D	V	A	I	Q	K	L	P
Query Conservation															.	.																																				.
Alig confidence															.	.																																				.																			.
Template Conservation																																																																							.
Template Sequence		E	G	F	L	G	G	S	A	D	L	G	P	S	N	K	T	E	L	H	S	X	G	D	F	V	E	G	K	N	I	H	F	G	I	R	E	H	A	X	A	A	I	N	N	A	F	A	R	Y	G	I	F	L	P	F	S	A	T	F	F	I	F	S	E	Y	L	K	P	A	.	A	R	I	A	A	L	X	K	I	K
Template Known Secondary structure		T	T						S	S						T				T	T	S		B	T	T	T	S	S						S																S	S									G	G	G	G	G	G	T				.								T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.
		414	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		V	L	F	A	I	D	R	A	G	I	.	V	G	A	D	G	Q	T	H	Q	G	A	F	D	L	S	Y	L	R	C	I	P	E	M	V	I	M	T	P	S	D	E	N	E	C	R	Q	M	L	Y	T	G	Y	H	Y	N	D	G	P	S	A	V	R	Y	P	R	G	N	A	V	G	V	E	L	T	P	L	E	K	L
Query Conservation												.
Alig confidence												.																																													.
Template Conservation																																																									.
Template Sequence		H	F	F	I	F	T	H	D	S	I	G	V	G	E	D	G	P	T	H	Q	P	I	E	Q	L	S	T	F	R	A	X	P	N	F	L	T	F	R	P	A	D	G	V	E	N	V	K	A	W	Q	I	A	L	N	A	.	D	I	P	S	A	F	V	L	S	R	Q	K	L	K	A	L	N	E	P	V	F	G	D	V
Template Known Secondary structure										S	G	G	G		T	T		G	G	G	S		S	S								S	S	S							S	S														S	.	S	S								S	S		B							S	B			G
Template Predicted Secondary structure																																																									.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		493	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.						.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.		.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure										.																										.	.	.	.	.																											.
Query SS confidence										.																										.	.	.	.	.																											.
Query Sequence		P	I	G	K	G	I	V	K	.	R	R	G	E	K	L	A	I	L	N	F	G	T	L	M	P	E	A	A	K	V	A	E	S	L	.	.	.	.	.	N	A	T	L	V	D	M	R	F	V	K	P	L	D	E	A	L	I	L	E	M	A	A	S	H	E	.	A	L	V	T	V	E	E	N	A	I	M	G	G	A
Query Conservation										.																										.	.	.	.	.																											.
Alig confidence										.																										.	.	.	.	.																											.
Template Conservation
Template Sequence		K	N	G	A	Y	L	L	K	E	S	K	E	A	K	F	T	L	L	A	S	G	S	E	V	W	L	C	L	E	S	A	N	E	L	E	K	Q	G	F	A	C	N	V	V	S	X	P	C	F	E	L	F	E	K	Q	D	K	A	Y	Q	E	R	L	L	K	G	E	V	I	G	V	E	A	A	H	S	N	E	L	Y
Template Known Secondary structure		G	G	S	S							T	T		S							G	G	G														T	T									S	B						T	S									S		S							S	S			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	G	V	N	E	V	L	M	A	H	R	K	P	V	P	V	L	N	I	G	L	P	D	F	F	I	P	Q	G	T	Q	E	E	M	R	A	E	L	G	L	D	A	A	G	M	E	A	K	I	K	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		K	.	.	.	.	.	.	.	.	.	.	.	.	.	F	C	H	K	V	Y	G	I	.	E	S	F	G	E	S	G	K	D	K	D	V	F	E	R	F	G	F	S	V	S	K	L	V	N	F	I	L	S
Template Known Secondary structure		G	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S						.		S				S	S									T	T		S									T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		594														.	.	.	.	.	600	.	.		.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.