Job Description P77488 Confidence 100.00% Date Thu Jan 5 12:29:48 GMT 2012 Rank 31 Aligned Residues 475 % Identity 16% Template c2yicC_ PDB info PDB header:lyase Chain: C: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of the suca domain of mycobacterium smegmatis2 alpha-ketoglutarate decarboxylase (triclinic form) Resolution 1.96 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.																	.																			.	.	.
Query SS confidence																						.	.	.	.	.	.	.																	.																			.	.	.
Query Sequence		G	H	S	S	T	S	I	S	A	G	I	G	I	A	V	A	A	E	K	E	.	.	.	.	.	.	.	G	K	N	R	R	T	V	C	V	I	G	D	G	A	I	T	.	A	G	M	A	F	E	A	M	N	H	A	G	D	I	R	P	D	M	.	.	.	L	V	I	L	N	D	N	E	M	S	I	S	E	N	V
Query Conservation																						.	.	.	.	.	.	.																	.																			.	.	.
Alig confidence																						.	.	.	.	.	.	.																	.																			.	.	.
Template Conservation
Template Sequence		S	H	L	E	A	V	D	P	V	L	E	G	L	V	R	A	K	Q	D	L	L	D	T	G	E	E	G	R	F	S	V	V	P	L	M	L	H	G	D	A	A	F	A	G	Q	G	V	V	A	E	T	L	N	L	A	L	L	R	G	Y	R	T	G	G	T	I	H	I	V	V	N	N	Q	I	G	F	T	T	A	P
Template Known Secondary structure		S	S	T	T	T	T															T	T		S	T	T																											T	T	T	T		T	T	T			S										S		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																																																																		.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																																		.	.	.	.	.	.	.	.
Query Sequence		G	A	L	N	N	.	.	H	L	A	Q	L	L	S	G	K	L	Y	S	S	L	R	E	G	G	K	K	V	F	S	G	V	P	P	I	K	E	L	L	K	R	T	E	E	H	I	K	G	M	V	V	P	G	T	L	F	E	E	L	G	F	N	Y	I	G	P	V	D	G	H	D	V	.	.	.	.	.	.	.	.
Query Conservation							.	.																																																																		.	.	.	.	.	.	.	.
Alig confidence							.	.																																																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	S	R	S	S	E	Y	C	T	D	V	A	K	M	I	G	A	P	I	F	H	V	N	G	D	D	P	E	A	C	A	W	V	A	R	L	A	V	D	F	R	Q	A	F	K	K	D	V	V	I	D	M	L	C	Y	R	R	R	G	H	N	E	G	D	D	P	S	M	T	Q	P	Y	M	Y	D	V	I	D	T
Template Known Secondary structure						S	S	S	S	T	T	G	G	G	G	G	G	T								T	T																																	S		S	S	T	T			G	G	G	T									T	T
Template Predicted Secondary structure
Template SS confidence
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
																																	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	L	I	T	T	L	K	N	M	R	D	L	K	G	P	Q	F	L	H	I	M	T	K	K	G	R	G	Y	E	P	A	E	K	D	P	I	T	F	H	A	V	P	K	F	D	P	S	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		K	R	G	S	R	K	A	Y	T	E	A	L	I	G	R	G	D	I	S	M	K	E	A	E	D	A	L	R	D	Y	Q	G	Q	L	E	R	V	F	N	E	V	R	E	L	E	K	H	.	.	.	.	.	E	L	A	T	A	V	D	K	A	M	L	Q	R	I	G	D	A	H	L	A	L	P	E	G	F	T	V	H
Template Known Secondary structure																T	T	S	S																														.	.	.	.	.																		T	T				T	T
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.						.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
		309	310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																			.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		G	C	L	P	K	.	.	.	.	.	.	.	.	S	S	G	G	L	P	S	Y	S	K	I	F	G	D	W	L	C	E	T	A	A	K	D	N	K	L	M	A	I	T	P	A	M	R	E	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	V	E	F	S	R	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation
Template Sequence		P	R	V	R	P	V	L	E	K	R	R	E	M	A	Y	E	G	R	I	D	W	A	F	A	E	L	L	A	L	G	S	L	I	A	E	G	K	L	V	R	L	S	G	Q	D	T	Q	R	G	T	F	T	Q	R	H	A	V	I	V	D	R	K	T	G	E	E	F	T	P	L	Q	L	L	A	T	N	P	D	G	T
Template Known Secondary structure		T	T	T																B																T	T								T	T	T	T	T		T	T	S				S	S				T	T	T						G	G	G	G	G	G	B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		858	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.
				358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.							.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure		.	.																																	.	.			.																		.	.	.	.	.	.
Query SS confidence		.	.																																	.	.			.																		.	.	.	.	.	.
Query Sequence		.	.	K	F	P	D	R	Y	F	D	V	A	I	A	E	Q	H	A	V	T	F	A	A	G	L	A	I	G	G	Y	K	P	I	V	.	.	A	I	.	Y	S	T	F	L	Q	R	A	Y	D	Q	V	L	H	D	V	A	.	.	.	.	.	.	I	Q	K	L	P	V	L	F	A	I	D	R	A	G	I	V	G	A
Query Conservation		.	.																																	.	.			.																		.	.	.	.	.	.
Alig confidence		.	.																																	.	.			.																		.	.	.	.	.	.													.
Template Conservation																																																																												.
Template Sequence		P	T	G	G	K	F	L	V	Y	N	S	A	L	S	E	F	A	A	V	G	F	E	Y	G	Y	S	V	G	N	P	D	A	M	V	L	W	E	A	Q	F	G	D	F	V	N	G	A	Q	S	I	I	D	E	F	I	S	S	G	E	A	K	W	G	Q	L	S	D	V	V	L	L	L	P	H	.	G	H	E	G	Q
Template Known Secondary structure		B		S										S		S															T	T	S							S	S	G	G	G	G	G	G	G							T	T	T	T																		.			S	S	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		938	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.		.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440			.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																.	.																														.																	.																.	.
Query SS confidence																.	.																														.																	.																.	.
Query Sequence		D	G	Q	T	H	Q	G	A	F	D	L	S	Y	L	.	.	R	C	I	P	E	M	V	I	M	T	P	S	D	E	N	E	C	R	Q	M	L	Y	T	G	Y	H	Y	N	D	.	G	P	S	A	V	R	Y	P	R	G	N	A	V	G	V	E	.	L	T	P	L	E	K	L	P	I	G	K	G	I	V	K	.	.
Query Conservation																.	.																														.																	.																.	.
Alig confidence		.														.	.																														.																	.																.	.
Template Conservation		.
Template Sequence		.	G	P	D	H	T	S	G	R	I	E	R	F	L	Q	L	W	A	E	G	S	M	T	I	A	M	P	S	T	P	A	N	Y	F	H	L	L	R	R	H	G	K	D	G	I	Q	R	P	L	I	V	F	T	P	K	S	M	L	R	N	K	A	A	V	S	D	I	R	D	F	T	E	S	K	F	R	S	V	L	E
Template Known Secondary structure		.		T	T	S	S													T	T	S								S														S	S											S	G	G	G	G		T	T	S		B							S					S
Template Predicted Secondary structure		.
Template SS confidence
			1017	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.
												501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.					.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.				550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																										.	.	.	.																									.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.	.																									.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	R	G	E	K	L	A	I	L	N	F	G	T	L	M	P	E	A	A	K	V	A	E	S	L	.	.	.	.	N	A	T	L	V	D	M	R	F	V	K	P	L	D	E	A	L	I	L	E	M	A	A	S	.	.	.	H	E	A	L	V	T	V	E	E	N	A	I	M	G
Query Conservation		.	.	.	.	.	.	.	.	.	.																										.	.	.	.																									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.													.	.	.	.																									.	.	.
Template Conservation																								.
Template Sequence		E	P	M	Y	T	D	G	E	G	D	R	N	K	V	T	R	L	L	L	T	S	G	.	K	I	Y	Y	E	L	A	A	R	K	A	K	E	N	R	E	D	V	A	I	V	R	I	E	Q	L	A	P	L	P	R	R	R	L	A	E	T	L	D	R	Y	P	N	V	K	E	K	F	W	V	Q	E	E	P	A	N	Q
Template Known Secondary structure							T	S	S			G	G	G									S	.	T													T		T	T											S											T	T		T	T												T	T	S
Template Predicted Secondary structure																								.
Template SS confidence
		1096	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.		.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.			.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		G	A	G	S	G	V	N	E	V	L	M	A	H	.	.	R	K	P	V	P	V	L	N	I	G	L	P	D	F	F	I	P	Q	G	T	Q	E	E	M	R	A	E
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		G	A	W	P	S	F	G	L	T	L	P	E	I	L	P	D	H	F	T	G	L	K	R	I	S	R	R	A	M	S	A	P	S	S	G	S	S	K	V	H	A	V
Template Known Secondary structure		T	T																	T	T										S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		1175	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.