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Job DescriptionP77488
Confidence100.00%DateThu Jan 5 12:29:48 GMT 2012
Rank2Aligned Residues570
% Identity48%Templatec2o1xA_
PDB info PDB header:transferaseChain: A: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 deinococcus radiodurans
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  AKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPH
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Template Sequence  SDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYAH
Template Known Secondary structure 
S
TTGGG
SSTTS
GGGTTSSS
TS
TTTSSSSTT
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  KILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMN
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Template Conservation    
          
    
 
             

 

 

  
 
 
 
 
       
   



   

   

  
Template Sequence  KILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALN
Template Known Secondary structure  TTTTGGGGGGTTSTTS

SS

GGG
TT

S

SSSS
T



TTGGGS
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  HAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEE
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Template Conservation   
    
  
 

 

   
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Template Sequence  TIGDMGRKMLIVLNDNEMSISENVGAMNKFM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVNPFAA
Template Known Secondary structure 

S
SBSSSB

SS
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TTGG
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   168.170.........180.........190........ .200.....
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  LGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIF
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Template Conservation   
       

 
   
  
   
     
  
   
 

 
   

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Template Sequence  MGVRYVGPVDGHNVQELVWLLERLVDLDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYV. . PSSAYSWSAAF
Template Known Secondary structure  GT
SS
TTSSS

TTTT

TTGGGS

SB
TTT

B
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B
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   251........260.........270.........280.........290.........300.........310....... ..320........
 
   326...330.........340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  GDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLH
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Template Conservation     
  
      
    


  
  
  
    
 
 

 



   

 
 


  
  
    
  

 

 


  
Template Sequence  GEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLH
Template Known Secondary structure 
TTSS
TTTTT

GGG

S
TT
GGG
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   329330.........340.........350.........360.........370.........380.........390.........400........
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  DVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVE
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Template Sequence  DVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH. DGPFAIRYPRGNTAQVP
Template Known Secondary structure  TTTTTT


SBB


TT
TTT
B
STTTSTT


SSS.SS


SSB




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   409410.........420.........430.........440.........450.........460.........470 .........480.......
 
   486...490.........500.........510.........520..... ....530.........540.........550.........560....
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Query Sequence  LTPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVAESL. NATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGG
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Template Sequence  AGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVGVVNARFVKPLDEEMLREVGGRARALITVEDNTVVGG
Template Known Secondary structure  TT





TT



SS
TT
TT

S


SSSSS
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   488.490.........500.........510.........520.........530.........540.........550.........560.......
 
   565....570.........580.........590.........600.........610.........620
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Query Sequence  AGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA
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Template Conservation   
  
   
        
  

  
 
  

    
    

  
 
   
  
  
Template Sequence  FGGAVLEALNSMNLHPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGV
Template Known Secondary structure  TT



SS


S

T
STT
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   568.570.........580.........590.........600.........610.........620...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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