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Job DescriptionP77488
Confidence100.00%DateThu Jan 5 12:29:48 GMT 2012
Rank1Aligned Residues535
% Identity98%Templatec2o1sC_
PDB info PDB header:transferaseChain: C: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 escherichia coli
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  FDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQA
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Template Conservation          
  
  
 


 
    
  

  

           

 
  

  

   
        
  
 
 

  
Template Sequence  FDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQA
Template Known Secondary structure 

TTTSTTGGG
SSTTS
GGGS
GGG
TTTS
TTTSSSSTT
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  YPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFE
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Template Conservation 
    
 
        
    
 
 
           

 

 

  
 
 
 
         
    


 
 

   
Template Sequence  YPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFE
Template Known Secondary structure  TTTGGGGGGTTSTTS

SS

TTT
TT

S

SSSS
TS


TTGGGS
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  AMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTL
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Template Conservation 
   
    
  

 
 


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Template Sequence  AXNHAGDIRPDXLVILNDNEGTL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

S


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   163......170.........180.....
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  FEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYS
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Template Conservation      
       

 
   
  
         
  
   
 

 
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Template Sequence  FEELGFNYIGPVDGHDVLGLITTLKNXRDLKGPQFLHIXTKKGRGYEPAL. . . . . . . . . . . . . . . . . . . . . . . . . . PSYS
Template Known Secondary structure  TT
TT
S
S


TT





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B
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   243......250.........260.........270.........280.........290.. ....
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  KIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQ
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Template Conservation    
   
         
  
 


        
    
 
 
  



  




 


  
  


  
  
   
 

Template Sequence  KIFGDWLCETAAKDNKLXAITPAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQ
Template Known Secondary structure 
TTSS
TTTTT

TTS

S
TT
GGG
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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
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Query Sequence  VLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAV
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Template Sequence  VLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDGPSAVRYPRGNAV
Template Known Secondary structure  TTTTT


S
B


TT
GGG
B
STTTSTT


SST

SS


SSB

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   403......410.........420.........430.........440.........450.........460.........470.........480..
 
   483......490.........500.........510.........520.........530.........540.........550.........560..
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Query Sequence  GVELTPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIM
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Template Conservation              
   
   
 

 


 
  
  

 


 
   

    
 
 
 
 
         





    
Template Sequence  GVELTPLEKLPIGKGIVKRRGEKLAILNFGTLXPEAAKVAESLNATLVDXRFVKPLDEALILEXAASHEALVTVEENAIX
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TT



SSSTTT


S

SSST
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   483......490.........500.........510.........520.........530.........540.........550.........560..
 
   563......570.........580.........590.........600.........610.........620
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Query Sequence  GGAGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA
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Template Conservation 

 
  
   
        
  

  
 
  

   

    


 
 
   
   

Template Sequence  GGAGSGVNEVLXAHRKPVPVLNIGLPDFFIPQGTQEEXRAELGLDAAGXEAKIKAWLA
Template Known Secondary structure  TSTT




SS



S
TT
S
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   563......570.........580.........590.........600.........610.........620
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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