Job Description P77488 Confidence 100.00% Date Thu Jan 5 12:29:48 GMT 2012 Rank 15 Aligned Residues 300 % Identity 18% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.					.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																				.	.	.	.									.																																	.
Query SS confidence																																				.	.	.	.									.																																	.
Query Sequence		L	P	S	Y	S	K	I	F	G	D	W	L	C	E	T	A	A	K	D	N	K	L	M	A	I	T	P	A	M	R	E	G	S	G	.	.	.	.	M	V	E	F	S	R	K	F	.	P	D	R	Y	F	D	V	A	I	A	E	Q	H	A	V	T	F	A	A	G	L	A	I	G	G	Y	K	P	I	V	A	I	.
Query Conservation																																				.	.	.	.									.																																	.
Alig confidence																																				.	.	.	.									.																																	.
Template Conservation
Template Sequence		Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	A	G	L	R	P	I	C	E	F	X
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	T								S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410							.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		Y	S	T	F	L	Q	R	A	Y	D	Q	V	L	H	D	V	A	I	Q	.	.	.	.	.	.	K	L	P	V	L	F	A	I	D	R	A	G	I	V	G	A	D	G	Q	T	H	Q	G	A	F	D	L	S	Y	L	R	C	I	P	E	M	V	I	M	T	P	S	D	E	N	E	C	R	Q	M	L	Y	T	G	Y
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	S	E	D	A	K	G	L	I	K	S	A	I
Template Known Secondary structure		S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	S			G	G	G										T	S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.							.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.						.	.	.	.	530	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																																									.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																																									.	.	.	.	.
Query Sequence		H	Y	N	D	G	P	S	A	V	R	Y	P	R	G	N	A	V	G	V	E	.	.	.	.	.	.	L	T	P	L	E	K	L	P	I	G	K	G	I	V	K	R	R	G	E	K	L	A	I	L	N	F	G	T	L	M	P	E	A	A	K	V	A	E	S	L	.	.	.	.	.	N	A	T	L	V	D	M	R	F
Query Conservation																						.	.	.	.	.	.																																									.	.	.	.	.
Alig confidence				.																		.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation				.
Template Sequence		R	D	.	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	I	E	R	Q	G	T	H	I	T	V	V	S	H	S	R	P	V	G	H	C	L	E	A	A	A	V	L	S	K	E	G	V	E	C	E	V	I	N	X	R	T
Template Known Secondary structure			S	.	S	S								T	T	T	T	T											S	T	T					T	T									S	S							S	T															T	T
Template Predicted Secondary structure				.
Template SS confidence
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.					.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		V	K	P	L	D	E	A	L	I	L	E	M	A	A	S	H	E	A	L	V	T	V	E	E	N	A	I	M	G	G	A	G	S	G	V	N	E	V	L	M	A	H	R	.	.	.	.	K	P	V	P	V	L	N	I	G	L	P	D	F	F	I	P	Q	G	T	Q	E	E	M	R	A	E	L	G	L	D	A	A	G
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.																					.	.
Template Conservation																																																																					.	.
Template Sequence		I	R	P	X	D	X	E	T	I	E	A	S	V	X	K	T	N	H	L	V	T	V	E	G	G	W	P	Q	F	G	V	G	A	E	I	C	A	R	I	X	E	G	P	A	F	N	F	L	D	A	P	A	V	R	V	T	G	A	D	V	P	X	P	Y	A	K	I	.	.	L	E	D	N	S	I	P	Q	V	K	D
Template Known Secondary structure				T														S							S	S		S	T	T	S												S	T	T	G	G	G		S	S									S	S				S	S			.	.				T	T	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.
		611	.	.	.	.	.	.	.	.	620
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	A	K	I	K	A	W	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	F	A	I	K	K	T	L	N
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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