Job Description P77488 Confidence 100.00% Date Thu Jan 5 12:29:48 GMT 2012 Rank 25 Aligned Residues 266 % Identity 24% Template c1ik6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate dehydrogenase; PDBTitle: 3d structure of the e1beta subunit of pyruvate2 dehydrogenase from the archeon pyrobaculum aerophilum Resolution 2.00 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	S	K	I	F	G	D	W	L	C	E	T	A	A	K	D	N	K	L	M	A	I	T	P	A	M	R	E	G	S	G	M	V	E	F	S	R	K	F	P	D	R	Y	F	D	V	A	I	A	E	Q	H	A	V	T	F	A	A	G	L	A	I	G	G	Y	K	P	I	V	A	I	Y	S	T	F	L	Q	R	A
Query Conservation
Alig confidence																																	.	.	.	.																																										.	.	.
Template Conservation																																	.	.	.	.																																										.	.	.
Template Sequence		N	M	A	K	A	I	N	M	A	L	H	E	E	M	E	R	D	E	R	V	V	V	L	G	E	L	V	T	E	G	L	.	.	.	.	Y	E	R	F	G	P	E	R	V	I	D	T	P	L	N	E	G	G	I	L	G	F	A	M	G	M	A	M	A	G	L	K	P	V	A	E	I	Q	F	V	L	.	.	.	G
Template Known Secondary structure																			T	T								T	T	T	T		.	.	.	.						T	T	T						S															T	T												.	.	.
Template Predicted Secondary structure																																	.	.	.	.																																										.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	Q	V	L	H	D	V	A	I	Q	K	L	P	V	L	F	A	I	D	R	A	G	I	V	G	A	D	G	Q	T	H	Q	G	A	F	D	L	S	Y	L	R	C	I	P	E	M	V	I	M	T	P	S	D	E	N	E	C	R	Q	M	L	Y	T	G	Y	H	Y	N	D	G	P	S	A	V	R	Y	P	R	G
Query Conservation
Alig confidence																									.	.	.	.	.					.	.	.	.	.	.																															.
Template Conservation																									.	.	.	.	.					.	.	.	.	.	.																															.
Template Sequence		A	D	E	L	L	N	H	I	A	K	L	R	Y	K	A	P	L	V	V	R	T	P	V	.	.	.	.	.	G	S	P	E	.	.	.	.	.	.	A	I	F	V	H	T	P	G	L	V	V	V	M	P	S	T	P	Y	N	A	K	G	L	L	K	A	A	I	R	G	.	D	D	P	V	V	F	L	E	P	K	I
Template Known Secondary structure																									.	.	.	.	.					.	.	.	.	.	.					T		T	T								S														S	.	S	S								G	G
Template Predicted Secondary structure																									.	.	.	.	.					.	.	.	.	.	.																															.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.
		480	.	.	.	.	.				.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.			.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure								.	.	.																																									.	.
Query SS confidence								.	.	.																																									.	.
Query Sequence		N	A	V	G	V	E	.	.	.	L	T	P	L	E	K	L	P	I	G	K	G	I	V	K	R	R	G	E	K	L	A	I	L	N	F	G	T	L	M	P	E	A	A	K	V	A	E	S	L	.	.	N	A	T	L	V	D	M	R	F	V	K	P	L	D	E	A	L	I	L	E	M	A	A	S	H	E	A	L	V
Query Conservation								.	.	.																																									.	.
Alig confidence								.	.	.																																									.	.
Template Conservation
Template Sequence		L	Y	R	A	P	R	E	E	V	P	E	G	D	Y	V	V	E	I	G	K	A	R	V	A	R	E	G	D	D	V	T	L	V	T	Y	G	A	V	V	H	K	A	L	E	A	A	E	R	V	K	A	S	V	E	V	V	D	L	Q	T	L	N	P	L	D	F	D	T	V	L	K	S	V	S	K	T	G	R	L	I
Template Known Secondary structure		G	S	S									S	S					T	T									S	S							T	T											T	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.				.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		T	V	E	E	N	A	I	M	G	G	A	G	S	G	V	N	E	V	L	M	A	H	R	.	.	.	K	P	V	P	V	L	N	I	G	L	P	D	F	F	I	P	Q	G	T	Q	E	E	M	R	A	E	L	G	L	D	A	A	G	M	E	A	K	I	K	A	W	L
Query Conservation																									.	.	.
Alig confidence																									.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	H	D	S	P	K	T	G	G	L	G	A	E	V	R	A	L	V	A	E	K	A	L	D	R	L	T	A	P	V	I	R	L	A	G	P	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	E	R	I	I	K	A	I	E	Y	V	M
Template Known Secondary structure								S	T	T	S													S	G	G	G		S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions