Return to main results Retrieve Phyre Job Id

Job DescriptionP0A7S9
Confidence100.00%DateThu Jan 5 11:06:08 GMT 2012
Rank4Aligned Residues118
% Identity33%Templatec3iz6M_
PDB info PDB header:ribosomeChain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.
Predicted Secondary structure 























...................
Query SS confidence 




























































. . . . . . . . . . . . . . . . . . .
Query Sequence  MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA. . . . . . . . . . . . . . . . . . .
Query Conservation 



    
   
 
  

  
 


   
  

   

        

  

  
   
 ...................
Alig confidence 




























































...................
Template Conservation 



  
 
 
 
 
  

  
 


   
  

   

        

  

  
   
       

 
  

 

  
Template Sequence  ILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYK
Template Known Secondary structure 


TTTT



SSBTTSTT

T

SSSBTTTS
S
SS





S
S


S

Template Predicted Secondary structure 



























Template SS confidence 















































































   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   62.......70.........80.........90.........100.........110........
Predicted Secondary structure  ....



































Query SS confidence  . . . .
























































Query Sequence  . . . . KFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK
Query Conservation  ....   
  

      

 

  
 



 

  














 
   
 
  
Alig confidence  ....
























































Template Conservation 

   


  

      

 

  
 



 

  















 



 


Template Sequence  DGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR
Template Known Secondary structure 

S

TT
TT
T

SS



SS


S

SS

Template Predicted Secondary structure 
































Template SS confidence 




























































   92.......100.........110.........120.........130.........140.........150..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions