Return to main results Retrieve Phyre Job Id

Job DescriptionP0A7S9
Confidence100.00%DateThu Jan 5 11:06:08 GMT 2012
Rank6Aligned Residues99
% Identity45%Templatec3bbnM_
PDB info PDB header:ribosomeChain: M: PDB Molecule:ribosomal protein s13; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
Resolution9.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM
Query Conservation 


    
   
 
  

  
 


   
  

   

        

  

  
   
    
  

      

 

 
Alig confidence 









































.











..........














Template Conservation 


    
   
 
  

  
 


   
  
    

    .   
       
..........  
       
 

 
Template Sequence  IRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKV. TKDLSEEEVIIL. . . . . . . . . . RKEKRFNRVAIERLK
Template Known Secondary structure 


SSS



SSBTTTGGGGSTT

SSTTTGGGTTTT

S
B.TTS

SSTT..........SS



STTT
Template Predicted Secondary structure 


















.


..........
Template SS confidence 















































































   47..50.........60.........70.........80........ .90.........100 .........110.....
 
   82.......90.........100.........110.
Predicted Secondary structure 

























Query SS confidence 





























Query Sequence  DLGCYRGLRHRRGLPVRGQRTKTNARTRKG
Query Conservation   
 



 

  














 
 
Alig confidence 





























Template Conservation   
 



 

  








 




 

Template Sequence  EIRCYRGIRHKLGLPVRGQRTKNNCRTLKG
Template Known Secondary structure 



S

TTTTTT

SSS

TTT


SS

Template Predicted Secondary structure 
























Template SS confidence 





























   116...120.........130.........140.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions