Job Description P0A7S9 Confidence 100.00% Date Thu Jan 5 11:06:08 GMT 2012 Rank 5 Aligned Residues 117 % Identity 34% Template c2zkqm_ PDB info PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	I	A	G	I	N	I	P	D	H	K	H	A	V	I	A	L	T	S	I	Y	G	V	G	K	T	R	S	K	A	I	L	A	A	A	G	I	A	E	D	V	K	I	S	E	L	S	E	G	Q	I	D	T	L	R	D	E	V	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	V	L	N	T	N	I	D	G	R	R	K	I	A	F	A	I	T	A	I	K	G	V	G	R	R	Y	A	H	V	V	L	R	K	A	D	I	D	L	T	K	R	A	G	E	L	T	E	D	E	V	E	R	V	I	T	I	M	Q	N	P	R	Q	Y	K	I	P	D	W	F	L	N	R	Q	K	D	V	K	D
Template Known Secondary structure					S	T	T					S	S	B					G	G	G	S	T	T														T			T	T	S	B	T	T	T	S														T	T		S			S				S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
						63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	F	V	V	E	G	D	L	R	R	E	I	S	M	S	I	K	R	L	M	D	L	G	C	Y	R	G	L	R	H	R	R	G	L	P	V	R	G	Q	R	T	K	T	N	A	R	T	R	K	G	P	R	K	P	I	K	K
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		G	K	Y	S	Q	V	L	A	N	G	L	D	N	K	L	R	E	D	L	E	R	L	K	K	I	R	A	H	R	G	L	R	H	F	W	G	L	R	V	R	G	Q	H	T	K	T	T	G	R	R	G	R	T	V	G	V	S	K	K	K
Template Known Secondary structure			S	S				S	S																	S	S										T			S	S				S	S	S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions