Job Description P0A7S9 Confidence 100.00% Date Thu Jan 5 11:06:08 GMT 2012 Rank 3 Aligned Residues 117 % Identity 33% Template c2xznM_ PDB info PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	R	I	A	G	I	N	I	P	D	H	K	H	A	V	I	A	L	T	S	I	Y	G	V	G	K	T	R	S	K	A	I	L	A	A	A	G	I	A	E	D	V	K	I	S	E	L	S	E	G	Q	I	D	T	L	R	D	E	V	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	H	R	I	L	N	T	N	I	D	G	K	R	I	T	P	I	A	L	T	G	I	R	G	I	G	R	R	F	A	Y	I	I	C	K	V	L	K	I	D	P	N	A	R	A	G	L	L	T	E	D	Q	C	N	K	I	T	D	L	I	A	D	P	E	A	H	G	I	P	T	W	L	L	N	R	I	N	D	F	K
Template Known Secondary structure						T	T	T					S	S							T	T	S	T	T													T	T			S	S	S		S	S		S														S								G	G	G		S					T	T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
							63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	F	V	V	E	G	D	L	R	R	E	I	S	M	S	I	K	R	L	M	D	L	G	C	Y	R	G	L	R	H	R	R	G	L	P	V	R	G	Q	R	T	K	T	N	A	R	T	R	K	G	P	R	K	P	I	K	K
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																				.
Template Conservation																																																										.
Template Sequence		D	G	K	N	Y	Q	M	A	S	N	T	L	D	T	K	M	R	E	D	L	E	R	L	K	K	I	K	S	H	R	G	L	R	H	F	W	G	L	K	V	R	G	Q	H	T	K	T	S	G	R	H	G	V	V	C	G	.	V	V	R	K
Template Known Secondary structure		T																										T										T			S	S	S				S	S	S	S		S	S				S	.	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions