 |
Job Description | P69054 | Confidence | 2.84% | Date | Thu Jan 5 12:11:14 GMT 2012 |
Rank | 72 | Aligned Residues | 120 |
% Identity | 11% | Template | c3cwbC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:cytochrome b; |
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
|
Resolution | 3.51 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
|
|
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | I | R | N | V | K | K | Q | R | P | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | L | D | L | Q | T | I | R | F | P | I | T | A | I | . |
. |
. |
A | S | I | L | H | R | V | S | G | V | I | T | F | V | A | V | G | I | L | L | W | L | L | G | T | S | L | S | S | P | E | G | F | E | Q | A | S | A | I | M |
Query Conservation |   |
  |   |   |
|   |   |   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|   |
|
|
|   |   |   |
|   |   | . | . | . |   |
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |
|
|
|
|
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |
|   |   |
|
|   |   |
|   |
Template Sequence |   |
M | A | P | N | I | R | K | S | H | P | L | L | K | M | I | N | N | S | L | I | D | L | P | A | P | S | N | I | S | A | W | W | N | F | G | S | L | L | A | V | C | L | M | T | Q | I | L | T | G | L | L | L | A | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
H | Y | T | A | D | T | S | L | A | F | S | S | V | A | H | T | C |
Template Known Secondary structure |   |
|
| S | S | T | T | S | S | S | T | T |  |  |  |  |  |  |  | T | T | S |
|  |  |  | T | T |
|
| S | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | . | . | . | T |
|
|
| S | T | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
66 | . | |
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | . |
F | F | V | K | F | I | M | W | G | I | L | T | A | L | A | Y | H | V | V | V | G | I | R | H | M | M | M | D | F | G | Y | L | E | E | T | F | E | A | G | K | R | S | A | K | I | S | F | V | I | T | V | V | L | S | L | L | A | G | V | L | V | W |
Query Conservation |   |
  |   | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |
|   |   |   |   |   |
|
|
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |
|
|
|   |   |
|   |   |
|
|
|   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|
|   |
|
|   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |
|
|   |
|
|   |
|
|
|
Template Sequence |   |
R | N | V | Q | Y | G | W | L | I | R | N | L | H | A | N | G | A | S | F | F | F | I | C | I | F | L | H | I | G | R | G | L | Y | Y | G | S | Y | L | Y | K | E | T | W | N | T | G | V | I | L | L | L | T | L | M | A | T | A | F | V | G | Y | V | L | P | W |
Template Known Secondary structure |   |
 |  | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | G | G | G | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|