Job Description Q46871 Confidence 100.00% Date Thu Jan 5 12:35:28 GMT 2012 Rank 5 Aligned Residues 235 % Identity 17% Template c2r6hC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Resolution 2.95 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80											.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	F	R	E	L	T	V	L	R	V	E	R	I	S	A	G	F	Q	R	I	V	L	G	G	E	A	L	D	G	F	T	S	R	G	F	D	D	H	S	K	L	F	F	P	Q	P	D	A	H	F	V	P	P	T	V	T	E	E	G	I	V	W	P	E	G	.	.	.	.	.	.	.	.	.	.	P	R	P	P
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		V	K	E	W	E	C	E	V	L	S	N	K	N	V	S	T	F	I	K	E	F	V	V	K	L	P	E	G	E	T	X	.	N	F	K	S	G	S	Y	A	Q	I	K	I	P	K	Y	N	I	R	Y	A	D	Y	D	I	Q	D	R	F	R	G	D	W	D	K	X	D	A	W	S	L	T	C	K	N	E	E	E	T
Template Known Secondary structure															S	S	S	S									S	T	T				.				T	T														G	G	G															T	G	G	G							S
Template Predicted Secondary structure																																	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.																.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	D	Y	T	P	L	Y	.	D	E	L	R	H	E	L	A	I	D	F	F	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	G	V	A	S	G	W	A	M	Q	A	Q	P	G	D	K	L	T	V	A	G	P	R	G	S	L	V	V	P	E	D	Y	A	Y	Q	L	Y	V	C	D	E
Query Conservation										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	A	Y	S	X	A	N	Y	P	A	E	G	N	I	I	T	L	N	V	R	I	A	T	P	P	F	D	R	A	A	N	K	W	K	A	G	I	K	P	G	I	S	S	S	Y	I	F	S	L	K	P	G	D	K	V	X	X	S	G	P	Y	G	D	F	H	I	Q	D	T	D	A	E	X	L	Y	I	G	G	G
Template Known Secondary structure									S		T	T			S															T	T	T	T				T	T												T			T	T																	S	S	S								G
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200															.	.	.	.	.	.
Predicted Secondary structure																		.																								.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																								.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	M	P	A	L	R	R	R	L	E	T	L	S	K	L	.	A	V	K	P	Q	V	S	A	L	V	S	V	R	D	N	A	C	Q	D	Y	L	A	H	.	.	.	.	.	.	.	L	D	G	F	N	I	E	W	L	A	H	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	V	D	A	R
Query Conservation																		.																								.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																								.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	X	A	P	L	R	A	Q	I	L	H	L	F	R	T	L	K	T	G	R	K	V	S	Y	W	Y	G	A	R	S	K	N	E	I	F	Y	E	E	D	F	R	E	I	E	R	E	F	P	N	F	K	F	H	I	A	L	S	D	P	Q	P	E	D	N	W	T	G	Y	V	G	F	I	H	Q	V	I	Y	D	N
Template Known Secondary structure		G	G														T	S				S									S	S	G	G	G			S												T	T								S	S			G	G	G				S			S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	M	Q	I	P	A	D	D	Y	F	I	W	I	T	G	E	G	K	V	V	K	N	L	S	R	R	F	E	A	E	Q	Y	D	P	Q	R	V	R	A	A	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	K	D	H	D	A	P	E	D	I	E	Y	Y	X	C	G	P	G	P	X	A	N	A	V	K	G	X	L	E	N	L	G	V	P	R	N	X	L	F	F	D	D	F
Template Known Secondary structure		T	T	T	T		S		G	G	G																							T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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