|   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | P | R | Y | P | Q | R | V | R | N | D | L | R | F | R | E | L | T | V | L | R | V | E | R | I | S | A | G | F | Q | R | I | V | L | G | G | E | A | L | D | G | F | T | S | R | G | F | D | D | H | S | K | L | F | F | P | Q | P | D | A | H | F | V | P | P | T | V | T | E | E | G | I | V | W | P | E | G | P | R | P |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |
|   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
T | P | Q | E | D | G | . |
. |
. |
. |
. |
. |
. |
F | L | R | L | K | I | A | S | K | E | K | I | A | R | D | I | W | S | F | E | L | T | D | P | Q | G | A | P | L | P | P | F | E | A | G | A | N | L | T | V | A | V | P | N | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
| T | T | T | T | T | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
| T | T |
|
|
|
|
|
|
|
| T | T |
|  |  |  |  |  |
| T | T | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | |
. | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | S | R | D | Y | T | P | L | Y | . |
D | E | L | R | H | E | L | A | I | D | F | F | I | H | D | G | G | V | A | . |
. |
S | G | W | A | M | Q | A | Q | P | G | D | K | L | T | V | A | G | P | R | G | S | L | V | V | P | E | D | Y | A | Y | Q | L | Y | V | C | D | E | S | G | M | P | A | L | R | R | R | L | E | T |
Query Conservation |   |
  |   |
|   |
|
|
|   |   | . |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   | . | . |
|   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|
|   |
|   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|
|
|   |   |   |   |
|   |   |
Template Sequence |   |
S | R | R | T | Y | S | L | C | N | D | S | Q | E | R | N | R | Y | V | I | A | V | K | R | D | S | N | G | R | G | G | S | I | S | F | I | D | D | T | S | E | G | D | A | V | E | V | S | L | P | R | N | E | F | P | L | D | K | R | A | K | S | F | I | L | V | A | G | G | I | G | I | T | P | M | L | S | M | A | R | Q |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |
| T | T |
|
| S |  |  |  |  |  |  |  |
|
| T | T | S |
| S |  |  |  |  |  |  |  | S |
|
| T | T |
|  |  |  |  |
|
|
| B |
|
| S |
|
|
| T | T |
| S |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
  |
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | K | L | A | V | K | P | Q | V | S | A | L | V | S | V | R | D | N | A | C | Q | D | Y | L | A | H | L | D | G | F | N | . |
. |
. |
. |
. |
. |
I | E | W | L | A | H | D | E | Q | A | V | D | A | R | L | A | Q | M | Q | I | P | A | D | D | Y | F | I | W | I | T | G | E | G | K | V | V | K | N | L | S | R | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   | . |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
L | R | A | E | G | . |
L | R | S | F | R | L | Y | Y | L | T | R | D | P | E | G | T | A | F | F | D | E | L | T | S | D | E | W | R | S | D | V | K | I | H | H | D | H | G | D | P | T | K | A | F | D | F | W | S | V | F | E | K | S | K | P | A | Q | H | V | Y | C | C | G | P | Q | A | L | M | D | T | V | R | D | M |
Template Known Secondary structure |   |
 |  |  |  |
| . | S | S |  |  |  |  |  |  |  |  | S |
| G | G | G |
| T | T |  |  |  |  |  | S | T | T | T | T | T | T |  |  |  |  |  |
| T | T |
| T | T | S |
|
|
|  |  |  |  |  | S | S |
|
| T | T |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
| . |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
133 | . | . | . | . | |
. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . |
  |
  |   |
235 | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | A | E | Q | Y | D | P | Q | R | V | R | A | A | A | Y |
Query Conservation |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|
Alig confidence |   |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
| . | . |   |   |   |   |   |   |   |
|   |   |
|   |
|
Template Sequence |   |
T | . |
. |
G | H | W | P | S | G | T | V | H | F | E | S | F |
Template Known Secondary structure |   |
T | . | . | T | T | S |
| T | T |
|  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 | . | . |  |
|
|
|  |  |  |
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
212 | |
|
. | . | . | . | . | . | . | 220 | . | . | . | . | . |
  |