Job Description Q46871 Confidence 100.00% Date Thu Jan 5 12:35:28 GMT 2012 Rank 17 Aligned Residues 223 % Identity 17% Template c1jb9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms Resolution 1.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		Y	P	Q	R	V	R	N	D	L	R	F	R	E	L	T	V	L	R	V	E	R	I	S	.	.	.	.	.	A	G	F	Q	R	I	V	L	G	G	E	A	L	D	G	F	T	S	R	G	F	D	D	H	S	K	L	F	F	P	Q	P	D	A	H	F	V	P	P	T	V	T	E	E	G	I	V	W	P	E	G	P
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	L	N	T	Y	K	P	K	E	P	F	T	A	T	I	V	S	V	E	S	L	V	G	P	K	A	P	G	E	T	C	H	I	V	I	D	H	G	G	N	V	P	Y	.	.	.	W	E	G	Q	S	Y	G	V	I	P	P	G	E	N	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	G	A
Template Known Secondary structure						S	B	B	T	T	B													S		T	T	S	S	S										T	T	S	S			.	.	.		T	T								S	S	B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure																																														.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.														.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.														.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140
Predicted Secondary structure															.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence															.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		R	P	P	S	R	D	Y	T	P	L	Y	D	E	.	.	.	.	.	L	R	H	E	L	A	I	D	F	F	I	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	V	A	S	G	W	A	M	Q	A	Q	P	G	D	K	L	T	V	A	G	P	R	G	S	L	V	V	.	.	.	P	E	D	Y	A
Query Conservation															.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence															.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		P	Q	N	V	R	L	Y	S	I	A	S	T	R	Y	G	D	N	F	D	G	R	T	G	S	L	C	V	R	R	A	V	Y	Y	D	P	E	T	G	K	E	D	P	S	K	N	G	V	C	S	N	F	L	C	N	S	K	P	G	D	K	I	Q	L	T	G	P	S	G	K	I	M	L	L	P	E	E	D	P	N	A
Template Known Secondary structure		B								B		S		T	T	T	T	T	T	S	S	S												B		T	T	T			B		G	G	G	S									T			T	T											S	T	T					S		T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																														.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence																														.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence		Y	Q	L	Y	V	C	D	E	S	G	M	P	A	L	R	R	R	L	E	T	L	S	K	L	A	V	K	P	.	.	.	.	.	Q	V	S	A	L	V	S	V	R	D	N	A	C	Q	D	Y	L	A	H	L	.	.	.	.	.	.	.	.	D	G	F	N	I	E	W	L	A	H	D	E	Q	A	.	.	.	.	.
Query Conservation																														.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence																														.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		T	H	I	M	I	A	T	G	T	G	V	A	P	F	R	G	Y	L	R	R	M	F	M	E	D	V	P	N	Y	R	F	G	G	L	A	W	L	F	L	G	V	A	N	S	D	S	L	L	Y	D	E	E	F	T	S	Y	L	K	Q	Y	P	D	N	F	R	Y	D	K	A	L	S	R	E	Q	K	G	K	M	Y	V
Template Known Secondary structure									G	G	G	G												T				T	T					S									S	S	G	G	G		S	S												T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
						203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																										.	.	.	.
Query SS confidence		.	.	.	.																										.	.	.	.
Query Sequence		.	.	.	.	V	D	A	R	L	A	Q	M	Q	I	P	A	D	D	Y	F	I	W	I	T	G	E	G	K	V	.	.	.	.	V	K	N	L	S	R	R	F	E	A	E	Q	Y	D	P	Q	R	V
Query Conservation		.	.	.	.																										.	.	.	.
Alig confidence		.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		Q	D	K	I	E	E	Y	S	D	E	I	F	K	L	L	D	G	G	A	H	I	Y	F	C	G	L	K	G	M	M	P	G	I	Q	D	T	L	K	K	V	A	E	R	R	G	E	S	W	D	Q	K
Template Known Secondary structure								T										T	T									G	G	G																T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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