Job Description Q46871 Confidence 100.00% Date Thu Jan 5 12:35:28 GMT 2012 Rank 7 Aligned Residues 216 % Identity 15% Template c1cqxB_ PDB info PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	E	L	T	V	L	R	V	E	R	I	S	A	G	F	Q	R	I	V	L	G	G	E	A	L	D	G	F	T	S	R	G	F	D	D	H	S	K	L	F	F	P	Q	P	D	A	H	F	V	P	P	T	V	T	E	E	G	I	V	W	P	E	G	P	R	P	P	S	R	D	Y	T	P	L	Y	D	E	L	R
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	R	T	F	V	I	R	E	K	R	P	E	S	D	V	I	T	S	F	I	L	E	P	A	D	G	G	P	V	V	N	F	E	P	G	Q	Y	T	S	V	A	I	D	V	P	A	L	G	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	R	Q	Y	S	L	S	D	M	P	N	G
Template Known Secondary structure														S	S	S									T	T									T	T										T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S				S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																		.	.	.	.	.	.	210	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.						110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.							.																				.
Query SS confidence															.	.	.	.	.							.																				.
Query Sequence		H	E	L	A	I	D	F	F	I	H	D	G	G	.	.	.	.	.	V	A	S	G	W	A	.	M	Q	A	Q	P	G	D	K	L	T	V	A	G	P	R	G	S	L	V	.	V	P	E	D	Y	A	Y	Q	L	Y	V	C	D	E	S	G	M	P	A	L	R	R	R	L	E	T	L	S	K	L	A	V	K	P	Q
Query Conservation															.	.	.	.	.							.																				.
Alig confidence															.	.	.	.	.							.																				.																																		.
Template Conservation																																																																																.
Template Sequence		R	T	Y	R	I	S	V	K	R	E	G	G	G	P	Q	P	P	G	Y	V	S	N	L	L	H	D	H	V	N	V	G	D	Q	V	K	L	A	A	P	Y	G	S	F	H	I	D	V	D	A	K	T	P	I	V	L	I	S	G	G	V	G	L	T	P	M	V	S	M	L	K	V	A	L	Q	A	P	P	R	.	Q
Template Known Secondary structure		S										S		S	S	S															T	T									B		S		S			T	T			S							S	S														T		S	S			.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200														.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	A	L	V	S	V	R	D	N	A	C	Q	D	Y	L	A	H	L	.	.	.	.	.	.	.	D	G	F	N	I	E	W	L	A	H	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	V	D	A	R	L	A	Q	M	Q	I	P	A	D	D	Y	F	I	W	I	T	G	E	G	K	V	V	K
Query Conservation																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	F	V	H	G	A	R	N	S	A	V	H	A	M	R	D	R	L	R	E	A	A	K	T	Y	E	N	L	D	L	F	V	F	Y	D	Q	P	L	P	E	D	V	Q	G	R	D	Y	D	Y	P	G	L	V	D	V	K	Q	I	E	K	S	I	L	L	P	D	A	D	Y	Y	I	C	G	P	I	P	F	M	R
Template Known Secondary structure											T	T	S															T	T								S	S			T	T			B	T	T	T	B	S			S	S			T	T	T	S							T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	S	R	R	F	E	A	E	Q	Y	D	P	Q	R	V	R	A	A	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	H	D	A	L	K	N	L	G	I	H	E	A	R	I	H	Y	E	V	F
Template Known Secondary structure									T	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions