Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 4 Aligned Residues 321 % Identity 17% Template d1umda_ SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 1.90

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		R	A	T	F	N	S	E	E	K	K	R	F	L	S	E	L	T	A	A	E	G	L	E	R	Y	L	G	A	K	F	P	G	A	K	R	.	.	.	F	S	L	E	G	G	D	A	L	I	P	M	L	K	E	M	I	R	H	A	G	N	S	G	T	R	E	V	V	L	G	M	A	H	R	G	R	L	N	V	L	V
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.														.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		P	L	D	L	E	G	E	K	L	R	R	L	Y	R	D	M	L	A	A	R	M	L	D	E	R	Y	T	I	L	I	R	T	G	K	T	S	F	I	A	P	A	A	G	H	E	A	A	Q	V	A	I	.	.	.	.	.	.	A	H	A	I	R	P	G	F	D	W	V	F	P	Y	Y	R	D	H	G	L	A	L	A
Template Known Secondary structure																																	T	T	S		S						T	T									.	.	.	.	.	.				S		T	T	T	S						T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	L	G	K	K	P	Q	D	L	F	D	E	F	A	G	K	H	K	E	H	L	G	T	G	D	V	K	Y	H	M	G	F	S	S	D	F	Q	T	D	G	G	L	V	H	L	A	L	A	F	N	P	S	H	L	E	I	V	S	P	V	V	I	G	S	V	R	A	R	L	D	R	L	D	E	P	S	S	N	K
Query Conservation
Alig confidence					.	.																												.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation					.	.																												.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Sequence		L	G	I	.	.	P	L	K	E	L	L	G	Q	M	L	A	T	K	A	D	P	N	K	G	R	Q	M	P	E	H	P	G	.	.	.	.	.	.	.	.	.	.	S	K	A	L	N	F	F	T	V	A	S	P	I	A	S	H	V	P	P	A	A	G	A	A	I	S	M	K	L	L	R	T	G	Q	.	.	.	.
Template Known Secondary structure			T		.	.											T	B	T	T		T	T	T	T		S		S	S				.	.	.	.	.	.	.	.	.	.	B	T	T	T	T	B					S	S	T	T	T	T														T	T				.	.	.	.
Template Predicted Secondary structure					.	.																												.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template SS confidence
		104	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.											.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	P	I	T	I	H	G	D	A	A	V	T	G	Q	G	V	V	Q	E	T	L	N	M	S	K	A	R	G	Y	E	V	G	G	T	V	R	I	V	I	N	N	Q	V	G	F	T	T	S	N	P	L	D	A	R	S	T	P	Y	C	T	D	I	G	K	M	V	Q	A	P	I	F	H	V	N	A	D	D	P	E
Query Conservation
Alig confidence		.													.																			.	.	.															.
Template Conservation		.													.																			.	.	.															.
Template Sequence		.	V	A	V	C	T	F	G	D	G	A	T	S	.	E	G	D	W	Y	A	G	I	N	F	A	A	V	Q	G	A	P	A	.	.	.	V	F	I	A	E	N	N	F	Y	A	I	S	V	D	.	Y	R	H	Q	T	H	S	P	T	I	A	D	K	A	H	A	F	G	I	P	G	Y	L	V	D	G	M	D	V	L
Template Known Secondary structure		.								T	G	G	G	G	.	S													T	T		S		.	.	.								S			T	T			.						S	S	S		S	G	G	G	G	G	G	T	T	S							T	T
Template Predicted Secondary structure		.													.																			.	.	.															.
Template SS confidence
			168	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		A	V	A	F	V	T	R	L	A	L	D	F	R	N	T	F	K	R	D	V	F	I	D	L	V	C	Y	R	R	H	G	H	N	E	A	D	E	P	S	.	A	T	Q	P	L	M	Y	Q	K	I	K	K	H	P	T	P	R	K	I	Y	A	D	K	L	E	Q	E	K	V	A	T	L	E	D	A	T	E	M	V	N
Query Conservation																																									.
Alig confidence																																									.																	.
Template Conservation																																																										.
Template Sequence		A	S	Y	Y	V	V	K	E	A	V	E	R	A	R	R	G	E	G	P	S	L	V	E	L	R	V	Y	R	Y	G	P	H	S	S	A	D	D	D	S	R	Y	R	P	K	E	E	V	A	F	W	R	K	K	D	P	I	.	P	R	F	R	R	F	L	E	A	R	G	L	W	N	E	E	W	E	E	D	V	R	E
Template Known Secondary structure																T	T														S		S	S	T	T			G	G	G	T	S										T	T				.									T	T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	R	D	A	L	D	A	G	D	C	V	V	A	E	W	R	P	M	N	M	H	S	F	T	W	S	P	Y	L	N	H	E	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	R	A	E	L	E	R	G	L	K	E	A	E	E	A	G	P	V	P	P	E	W	M	F	E	D	V	F	A	E	K	P	W
Template Known Secondary structure																	T		B			G	G	G	G	G	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions