Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 6 Aligned Residues 325 % Identity 14% Template d1qs0a_ SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 2.40

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		I	E	S	G	R	A	T	F	N	S	E	E	K	K	R	F	L	S	E	L	T	A	A	E	G	L	E	R	Y	L	G	A	K	F	P	G	A	K	R	F	S	.	.	.	L	E	G	G	D	A	L	I	P	M	L	K	E	M	I	R	H	A	G	N	S	G	T	R	E	V	V	L	G	M	A	H	R	G	R	L
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.												.	.	.	.	.	.													.
Template Conservation																																																									.	.	.	.	.	.													.
Template Sequence		Q	G	P	W	A	E	D	I	D	P	Q	I	L	R	Q	G	X	R	A	X	L	K	T	R	I	F	D	S	R	X	V	V	A	Q	R	Q	K	K	X	S	F	Y	X	Q	S	L	G	E	E	A	I	G	S	G	Q	.	.	.	.	.	.	A	L	A	L	N	R	T	D	X	C	F	P	.	T	Y	R	Q	Q	S
Template Known Secondary structure			S	G	G	G	S	S																													T	T	S	S	S						T	T	T								.	.	.	.	.	.				S		T	T	S					.		S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.													.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	L	V	N	V	L	G	K	K	P	Q	D	L	F	D	E	F	A	G	K	H	K	E	H	L	G	T	G	D	V	K	Y	H	M	G	F	S	S	D	F	Q	T	D	G	G	L	V	H	L	A	L	A	F	N	P	S	H	L	E	I	V	S	P	V	V	I	G	S	V	R	A	R	L	D	R	L	D	E	P
Query Conservation
Alig confidence							.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	X	A	R	.	.	D	V	S	L	V	E	X	I	C	Q	L	L	S	N	E	R	D	P	L	K	G	R	Q	L	P	I	X	Y	S	V	R	E	A	G	.	.	.	.	.	.	.	.	.	.	F	F	T	I	S	G	N	L	A	T	Q	F	V	Q	A	V	G	W	A	X	A	S	A	I	K	G	D	T	K
Template Known Secondary structure						T	.	.	T												T		T	T		T	T	T	T		S		T	T				B	G	G	G	T	.	.	.	.	.	.	.	.	.	.	B					S	S	S	S																T	T
Template Predicted Secondary structure							.	.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	N	K	V	L	P	I	T	I	H	G	D	A	A	V	T	G	Q	G	V	V	Q	E	T	L	N	M	S	K	A	R	G	Y	E	V	G	G	T	V	R	I	V	I	N	N	Q	V	G	F	T	T	S	N	P	L	D	A	R	S	T	P	Y	C	T	D	I	G	K	M	V	Q	A	P	I	F	H	V	N	A
Query Conservation
Alig confidence		.	.	.	.	.													.																			.	.	.
Template Conservation		.	.	.	.	.													.																			.	.	.
Template Sequence		.	.	.	.	.	I	A	S	A	W	I	G	D	G	A	T	A	.	E	S	D	F	H	T	A	L	T	F	A	H	V	Y	R	A	P	V	.	.	.	I	L	N	V	V	N	N	Q	W	A	I	S	T	F	Q	A	I	A	G	G	E	S	T	T	F	A	G	R	G	V	G	C	G	I	A	S	L	R	V	D	G
Template Known Secondary structure		.	.	.	.	.								T	G	G	G	G	.	S														T				.	.	.								S			T	T			G	G	G	G	T	T	T	T			S	T						T	T								T
Template Predicted Secondary structure		.	.	.	.	.													.																			.	.	.
Template SS confidence
							206	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		D	D	P	E	A	V	A	F	V	T	R	L	A	L	D	F	R	N	T	F	K	R	D	V	F	I	D	L	V	C	Y	R	R	H	G	H	N	E	A	D	E	P	S	.	A	T	Q	P	L	M	Y	Q	K	I	K	K	H	P	T	P	R	K	I	Y	A	D	K	L	E	Q	E	K	V	A	T	L	E	D	A	T
Query Conservation																																													.
Alig confidence																																													.																	.
Template Conservation																																																														.
Template Sequence		N	D	F	V	A	V	Y	A	A	S	R	W	A	A	E	R	A	R	R	G	L	G	P	S	L	I	E	W	V	T	Y	R	A	G	P	H	S	T	S	D	D	P	S	K	Y	R	P	A	D	D	W	S	H	F	P	L	G	D	P	I	.	A	R	L	K	Q	H	L	I	K	I	G	H	W	S	E	E	E	H	Q
Template Known Secondary structure		T																		T	T	S													S		S	S	T	T			G	G	G	T	S		T	T						T	T					.										T	T	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.							.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		E	M	V	N	L	Y	R	D	A	L	D	A	G	D	C	V	V	A	E	.	.	.	.	.	.	W	R	P	M	N	M	H	S	F	T	W	S	P	Y	L	N	H	E	W
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	T	A	E	F	E	A	A	V	I	A	A	Q	K	E	A	E	Q	Y	G	T	L	A	N	G	H	I	P	S	A	A	S	X	F	E	D	V	Y	K	E	X	P	D
Template Known Secondary structure																				T	T			S	S	S						S	S	G	G	G	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions