Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 20 Aligned Residues 470 % Identity 14% Template c3m7iA_ PDB info PDB header:transferase Chain: A: PDB Molecule:transketolase; PDBTitle: crystal structure of transketolase in complex with thiamine2 diphosphate, ribose-5-phosphate(pyranose form) and3 magnesium ion Resolution 1.75 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																																		.
Query SS confidence																										.	.	.	.																																		.
Query Sequence		H	L	E	I	V	S	P	V	V	I	G	S	V	R	A	R	L	D	R	L	D	E	P	S	.	.	.	.	S	N	K	V	L	P	I	T	I	H	G	D	A	A	V	T	G	Q	G	V	V	Q	E	T	L	N	M	S	K	A	R	G	Y	.	E	V	G	G	T	V	R	I	V	I	N	N	Q	V	G	F	T	T
Query Conservation																										.	.	.	.																																		.
Alig confidence																										.	.	.	.									.	.							.																	.			.	.	.
Template Conservation																																						.	.							.																				.	.	.
Template Sequence		P	L	G	Q	G	V	A	N	A	V	G	F	A	X	A	A	K	K	A	Q	N	L	L	G	S	D	L	I	D	H	K	I	Y	C	L	C	.	.	G	D	G	D	L	Q	.	E	G	I	S	Y	E	A	C	S	L	A	G	L	H	K	L	D	N	F	.	.	.	I	L	I	Y	D	S	N	N	I	S	I	E	G
Template Known Secondary structure		S	T	T																						T	T	T										.	.							.	S													T	T		T	T		.	.	.								S			T	T
Template Predicted Secondary structure																																						.	.							.																				.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		S	N	P	L	D	A	R	S	T	P	Y	C	T	D	I	G	K	M	V	Q	A	P	I	F	H	V	N	A	D	D	P	E	A	V	A	F	V	T	R	L	A	L	D	F	R	N	T	F	K	R	D	V	F	I	D	L	V	C	Y	R	R	H	G	H	N	E	A	D	E	P	S	.	.	A	T	Q	P	L	M	Y
Query Conservation																																																																									.	.
Alig confidence		.	.																																								.	.	.	.																											.	.
Template Conservation		.	.																																								.	.	.	.
Template Sequence		.	.	D	V	G	L	A	F	N	E	N	V	K	X	R	F	E	A	Q	G	F	E	V	L	S	I	N	G	H	D	Y	E	E	I	N	K	A	L	E	Q	A	.	.	.	.	K	K	S	T	K	P	C	L	I	I	A	K	T	T	I	A	K	G	A	G	E	L	E	G	S	H	K	S	H	G	A	P	L	G	E
Template Known Secondary structure		.	.		G	G	G	T												T	T								T	T													.	.	.	.		T		S	S										T	T	T	T		G	G	G	T	T		G	G	G	S	S	S
Template Predicted Secondary structure		.	.																																								.	.	.	.
Template SS confidence
				189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	I	K	K	H	P	T	P	R	K	I	Y	A	D	K	L	E	Q	E	K	V	A	T	L	E	D	A	T	E	M	V	N	L	Y	R	D	A	L	D	A	G	D	C	V	V	A	E	W	R	P	M	N	M	H	S	F	T	W	S	P	Y	L	N	H	E	W	D	E	E	Y	P	N	K	V	E	M	K	R	L
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		E	V	I	K	K	A	K	E	Q	A	G	F	D	P	N	I	S	F	H	I	P	Q	A	S	K	I	R	F	E	S	A	V	E	L	G	D	L	E	E	A	K	W	K	D	K	L	E	K	S	A	K	K	E	L	L	E	R	L	L	N	P	D	F	N	K	I	A	Y	P	D	F	K	.	.	.	.	.	.	.	.
Template Known Secondary structure												T			T	T			S																																T	T									S				T	T							T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	L	A	K	R	I	S	T	V	P	E	A	V	E	M	Q	S	R	V	A	K	I	Y	G	D	R	Q	A	M	A	A	G	E	K	L	F	D	W	G	G	A	E	N	L	A	Y	A	T	L	V	D	E	G	I	P	V	R	L	S	G	E	D	S	G	R	G	T	F	F	H	R	H	A	V	I	H	N	Q	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	D	L	A	T	R	D	S	N	G	E	I	L	N	V	L	A	K	N	L	E	G	F	L	G	G	S	A	D	L	G	P	S	N	K	T	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			B																		T	T						S	S						T		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																			335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		635	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	S	T	Y	T	P	L	Q	H	I	H	N	G	Q	G	A	F	R	V	W	D	S	V	L	S	E	E	A	V	L	A	F	E	Y	G	Y	A	T	A	E	P	R	T	L	T	I	W	E	A	Q	F	G	D	F	A	N	G	A	Q	V	V	I	D	Q	F	I	S	S	G	E	Q	K	W	G	R	M	C	G	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																								.	.																.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																								.	.																.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	L	H	S	X	G	D	F	V	E	G	K	N	I	H	F	G	I	R	E	H	A	X	A	A	I	N	N	A	F	A	R	Y	G	I	F	L	P	F	.	.	S	A	T	F	F	I	F	S	E	Y	L	K	P	A	A	.	.	.	.	.	.	.	R	I	A	A	L	X	K	I	K	H
Template Known Secondary structure		.	.	.	.	.	.	.			T	T	S		B	T	T	T	S	S						S																S	S					.	.					G	G	G	G	G	G	T					.	.	.	.	.	.	.							T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																								.	.																.	.	.	.	.	.	.
Template SS confidence
									372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.	.	.	.								.	.	.	.	430	.	.	.	.	.
		715	.	.	.	.	720	.				.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		V	M	L	L	P	H	G	.	.	.	Y	E	G	Q	G	P	E	H	S	S	A	R	L	E	R	Y	L	Q	L	C	A	E	Q	N	M	Q	V	C	V	P	S	T	P	A	Q	V	Y	H	M	L	R	R	Q	A	L	R	G	M	R	R	P	L	V	V	M	S	P	K	S	L	L	R	H	P	L	A	V	S	S	L
Query Conservation									.	.	.
Alig confidence									.	.	.																		.	.																													.	.																	.
Template Conservation																													.	.																													.	.																	.
Template Sequence		F	F	I	F	T	H	D	S	I	G	V	G	E	D	G	P	T	H	Q	P	I	E	Q	L	S	T	F	.	.	R	A	X	P	N	F	L	T	F	R	P	A	D	G	V	E	N	V	K	A	W	Q	I	A	L	N	A	D	.	.	I	P	S	A	F	V	L	S	R	Q	K	L	K	A	L	N	.	E	P	V	F
Template Known Secondary structure									S	G	G	G		T	T		G	G	G	S		S	S						.	.			S	S	S							S	S														S	S	.	.	S								S	S		B					.			S	B
Template Predicted Secondary structure																													.	.																													.	.																	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.			.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490			.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.		.	.	.	510
		792	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		E	E	L	A	N	G	T	F	L	P	A	I	G	E	I	D	E	L	D	P	K	G	V	K	R	V	V	M	C	S	G	K	V	Y	Y	D	L	L	E	Q	R	R	.	K	N	N	Q	H	D	V	A	I	V	R	I	E	Q	L	Y	P	F	P	H	K	A	M	Q	E	V	L	Q	Q	F	A	H	V	K	D	F	V
Query Conservation																																												.
Alig confidence													.	.	.	.	.	.																										.																														.	.	.
Template Conservation													.	.	.	.	.	.																																																								.	.	.
Template Sequence		G	D	V	K	N	G	A	Y	L	L	K	.	.	.	.	.	.	E	S	K	E	A	K	F	T	L	L	A	S	G	S	E	V	W	L	C	L	E	S	A	N	E	L	E	K	Q	G	F	A	C	N	V	V	S	X	P	C	F	E	L	F	E	K	Q	D	K	A	Y	Q	E	R	L	.	.	.	L	K	G	E	V
Template Known Secondary structure				G	G	G	S	S					.	.	.	.	.	.			T	T		S							G	G	G														T	T									S	B						T	S									.	.	.	S		S
Template Predicted Secondary structure													.	.	.	.	.	.																																																								.	.	.
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.							.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.				.	.	.	580	.
		871	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	C	Q	E	E	P	L	N	Q	G	A	W	Y	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	V	E	A	A	H	S	N	E	L	Y	K	F
Template Known Secondary structure						S	S			G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.	.	.