Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 1 Aligned Residues 850 % Identity 46% Template c2xt6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of mycobacterium smegmatis alpha-ketoglutarate2 decarboxylase homodimer (orthorhombic form) Resolution 2.74 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	A	N	Q	S	W	I	E	Q	L	Y	E	D	F	L	T	D	P	D	S	V	D	A	N	W	R	S	T	F	Q	Q	L	P	G	T	G	V	K	P	D	Q	F	H	S	Q	T	R	E	Y	F	R	R	L	A	K	D	A	S	R	Y	S	S	T	I	S	D	P	D	T	N	V	K	Q	V	K	V	L	Q	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	D	F	L	R	T	I	H	Q	L	L	.	.	.	.	.	.	.	L	D	.	D	D	F	F	D	E	I	F	R	E	L	G	I	P	Y	E	P	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	T	D	N	P	D	S	I	E	D	K	N	A	R	V	I	E	L
Template Known Secondary structure													T	.	.	.	.	.	.	.	T		.											T	T			S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure														.	.	.	.	.	.	.			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.								.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.																					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		I	N	A	Y	R	F	R	G	H	Q	H	A	N	L	D	P	L	G	L	.	.	W	Q	Q	D	K	V	A	D	L	D	P	S	F	H	D	L	T	E	A	D	F	Q	E	T	F	N	V	G	S	F	A	S	G	K	E	T	M	K	L	G	E	L	L	E	A	L	K	Q	T	Y	C	G	P	I	G	A	E	Y	M
Query Conservation																					.	.
Alig confidence																					.	.																																.
Template Conservation																																																						.
Template Sequence		I	A	A	Y	R	N	R	G	H	L	M	A	D	I	D	P	L	R	L	D	N	T	R	F	R	S	H	P	D	L	D	V	N	S	H	G	L	T	L	W	D	L	D	R	E	F	K	V	D	G	F	A	.	G	V	Q	R	K	K	L	R	D	I	L	S	V	L	R	D	A	Y	C	R	H	V	G	V	E	Y	T
Template Known Secondary structure									G	G	G	G	S				T	T				G	G	G	G	T	S		T	T	T		S	G	G	G	T			G	G	G	T	T	S							T	T	.																			T	S	S						T
Template Predicted Secondary structure																																																						.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	T	S	T	E	E	K	R	W	I	Q	Q	R	I	E	S	G	R	A	T	F	N	S	E	E	K	K	R	F	L	S	E	L	T	A	A	E	G	L	E	R	Y	L	G	A	K	F	P	G	A	K	R	F	S	L	E	G	G	D	A	L	I	P	M	L	K	E	M	I	R	H	A	G	N	S	G	T	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	I	L	E	P	E	Q	Q	R	W	I	Q	E	R	V	E	T	K	H	D	K	P	T	V	A	E	Q	K	Y	I	L	S	K	L	N	A	A	E	A	F	E	T	F	L	Q	T	K	Y	V	G	Q	K	R	F	S	L	E	G	A	E	T	V	I	P	M	M	D	A	V	I	D	Q	C	A	E	H	G	L	D	E
Template Known Secondary structure		T		S														S																																S	S	T	T	T	T			T	T		T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		V	V	L	G	M	A	H	R	G	R	L	N	V	L	V	N	V	L	G	K	K	P	Q	D	L	F	D	E	F	A	G	K	H	K	E	H	L	G	T	G	D	V	K	Y	H	M	G	F	S	S	D	F	Q	T	.	.	D	G	G	L	V	H	L	A	L	A	F	N	P	S	H	L	E	I	V	S	P	V	V	I
Query Conservation																																																								.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	I	A	M	P	H	R	G	R	L	N	V	L	A	N	I	V	G	K	P	Y	S	Q	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	V	K	Y	H	L	G	A	T	G	T	Y	I	Q	M	F	G	D	N	D	I	E	V	S	L	T	A	N	P	S	H	L	E	A	V	D	P	V	L	E
Template Known Secondary structure								S	T	T								T	T								T	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T										S	S	S	S												S	S	T	T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.														.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		G	S	V	R	A	R	L	D	R	L	D	.	.	.	.	.	E	P	S	S	N	K	V	L	P	I	T	I	H	G	D	A	A	V	T	G	Q	G	V	V	Q	E	T	L	N	M	S	K	A	R	G	Y	E	V	G	G	T	V	R	I	V	I	N	N	Q	V	G	F	T	T	S	N	P	L	D	A	R	S	T	P
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																																																							.
Template Conservation																																																																								.
Template Sequence		G	L	V	R	A	K	Q	D	L	L	D	T	G	E	E	G	S	D	N	R	F	S	V	V	P	L	M	L	H	G	D	A	A	F	A	G	Q	G	V	V	A	E	T	L	N	L	A	L	L	R	G	Y	R	T	G	G	T	I	H	I	V	V	N	N	Q	I	G	F	T	T	.	A	P	T	D	S	R	S	S	E
Template Known Secondary structure											T	T	B	S	T	T	S	S	B	S																										T	T	T	T		T	T	T			S										S		B	T	T	B	.							S	S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.		.	.	.	.	.	690	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	T	D	I	G	K	M	V	Q	A	P	I	F	H	V	N	A	D	D	P	E	A	V	A	F	V	T	R	L	A	L	D	F	R	N	T	F	K	R	D	V	F	I	D	L	V	C	Y	R	R	H	G	H	N	E	A	D	E	P	S	A	T	Q	P	L	M	Y	Q	K	I	K	K	H	P	T	P	R	K	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	C	T	D	V	A	K	M	I	G	A	P	I	F	H	V	N	G	D	D	P	E	A	C	A	W	V	A	R	L	A	V	D	F	R	Q	A	F	K	K	D	V	V	I	D	M	L	C	Y	R	R	R	G	H	N	E	G	D	D	P	S	M	T	Q	P	Y	M	Y	D	V	I	D	T	K	R	G	S	R	K	A
Template Known Secondary structure		S	T	T	G	G	G	G	G	G	T								T	T																																	S		S	S	S	S			G	G	G	T									T	T
Template Predicted Secondary structure
Template SS confidence
		694	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	D	K	L	E	Q	E	K	V	A	T	L	E	D	A	T	E	M	V	N	L	Y	R	D	A	L	D	A	G	D	C	V	V	A	E	W	R	P	M	N	M	H	S	F	T	W	S	P	Y	L	N	H	E	W	D	E	E	Y	P	N	K	V	E	M	K	R	L	Q	E	L	A	K	R	I	S	T	V	P	E
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	E	A	L	I	G	R	G	D	I	S	M	K	E	A	E	D	A	L	R	D	Y	Q	G	Q	L	E	R	V	F	N	E	V	R	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	A	V	D	K	A	M	L	Q	R	I	G	D	A	H	L	A	L	P	E
Template Known Secondary structure										T	S	S																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T				T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810																							.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	M	Q	S	R	V	A	K	I	Y	G	D	R	Q	A	M	A	A	G	E	K	L	F	D	W	G	G	A	E	N	L	A	Y	A	T	L	V	D	E	G	I	P	V	R	L	S	G	E	D	S	G	R	G	T	F	F	H	R	H	A	V	I	H	N	Q	S	N	G	S	T	Y	T	P	L	Q	H	I	H
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		G	F	T	V	H	P	R	V	R	P	V	L	E	K	R	R	E	M	A	Y	E	G	.	R	I	D	W	A	F	A	E	L	L	A	L	G	S	L	I	A	E	G	K	L	V	R	L	S	G	Q	D	T	Q	R	G	T	F	T	Q	R	H	A	V	I	V	D	R	K	T	G	E	E	F	T	P	L	Q	L	L	A
Template Known Secondary structure		T					T	T	T															.		B																T	T								T	T	T	T	T		T	T	S				S	S				T	T	T						G	G	G	G	G	G
Template Predicted Secondary structure																								.
Template SS confidence
		853	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.		.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
		647	.							.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		N	G	.	.	.	.	.	.	Q	G	A	F	R	V	W	D	S	V	L	S	E	E	A	V	L	A	F	E	Y	G	Y	A	T	A	E	P	R	T	L	T	I	W	E	A	Q	F	G	D	F	A	N	G	A	Q	V	V	I	D	Q	F	I	S	S	G	E	Q	K	W	G	R	M	C	G	L	V	M	L	L	P	H
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		T	N	P	D	G	T	P	T	G	G	K	F	L	V	Y	N	S	A	L	S	E	F	A	A	V	G	F	E	Y	G	Y	S	V	G	N	P	D	A	M	V	L	W	E	A	Q	F	G	D	F	V	N	G	A	Q	S	I	I	D	E	F	I	S	S	G	E	A	K	W	G	Q	L	S	D	V	V	L	L	L	P	H
Template Known Secondary structure		B		T	T	S		B		S										S		S															T	T								S	S	G	G	G	G	G	G	G							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		932	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	E	G	Q	G	P	E	H	S	S	A	R	L	E	R	Y	L	Q	L	C	A	E	Q	N	M	Q	V	C	V	P	S	T	P	A	Q	V	Y	H	M	L	R	R	Q	A	L	R	G	M	R	R	P	L	V	V	M	S	P	K	S	L	L	R	H	P	L	A	V	S	S	L	E	E	L	A	N	G	T	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	E	G	Q	G	P	D	H	T	S	G	R	I	E	R	F	L	Q	L	W	A	E	G	S	M	T	I	A	M	P	S	T	P	A	N	Y	F	H	L	L	R	R	H	G	K	D	G	I	Q	R	P	L	I	V	F	T	P	K	S	M	L	R	N	K	A	A	V	S	D	I	R	D	F	T	E	S	K	F	R
Template Known Secondary structure				S	S	S		T	T	S	S													T	T	S							S	S														S	S											S	G	G	G	S		S	S	S		B							S
Template Predicted Secondary structure
Template SS confidence
		1012	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.
		801	.	.	.	.					.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		P	A	I	G	E	.	.	.	.	I	D	E	L	D	P	K	G	V	K	R	V	V	M	C	S	G	K	V	Y	Y	D	L	L	E	Q	R	R	K	N	N	Q	H	D	V	A	I	V	R	I	E	Q	L	Y	P	F	P	H	K	A	M	Q	E	V	L	Q	Q	F	A	H	V	K	D	F	V	W	C	Q	E	E	P
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.
Template Conservation
Template Sequence		S	V	L	E	E	P	M	Y	T	D	G	E	G	D	R	N	K	V	T	R	L	L	L	T	S	G	K	I	Y	Y	E	L	A	A	R	K	A	K	E	N	R	E	D	V	A	I	V	R	I	E	Q	L	A	P	L	P	R	R	R	L	A	E	T	L	D	R	Y	P	N	V	K	E	K	F	W	V	Q	E	E	P
Template Known Secondary structure		S									T	S				S	T	T									S	T													T		T	T							S				S											T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		1092	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.
		877	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.		.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		L	N	Q	G	A	W	Y	C	S	Q	H	H	F	R	E	V	I	P	F	G	.	A	S	L	R	Y	A	G	R	P	A	S	A	S	P	A	V	G	Y	M	S	V	H	Q	K	Q	Q	Q	D	L	V	N	D	A	L	N
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		A	N	Q	G	A	W	P	S	F	G	L	T	L	P	E	I	L	P	D	H	F	T	G	L	K	R	I	S	R	R	A	M	S	A	P	S	S	G	S	S	K	V	H	A	V	E	Q	Q	E	I	L	D	T	A	F	G
Template Known Secondary structure		T	T	S	T	T																	T	T										S	S	S	S		S																	T
Template Predicted Secondary structure
Template SS confidence
		1172	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.