Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 15 Aligned Residues 315 % Identity 18% Template c2bp7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) Resolution 2.9 Å

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		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	F	D	W	G	G	A	E	N	L	A	Y	A	T	L	V	D	E	G	I	P	V	R	L	S	G	E	D	S	G	R	G	T	F	F	H	R	H	A	V	I	H	N	Q	S	N	G	S	T	Y	T	P	L	Q	H	I	H	N	G	Q	G	A	F	R	V	W	D	S	V	L	S	E	E	A	V	L	A	F	E
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	M	T	M	I	Q	A	L	R	S	A	M	D	V	M	L	E	R	D	D	N	V	V	V	Y	G	Q	D	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	G	G	V	F	R	C	T	E	G	L	Q	T	K	Y	G	K	S	R	V	F	D	A	P	I	S	E	S	G	I	V	G	T	A
Template Known Secondary structure																						T	T						T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			T	T	S	T	T	T	T							T	T	T						S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.															.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.						.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		Y	G	Y	A	T	A	E	P	R	T	L	T	I	W	E	A	Q	F	G	D	F	A	N	G	A	Q	V	V	I	D	Q	F	I	S	S	G	.	.	.	.	.	E	Q	K	W	G	R	M	C	G	L	V	M	L	L	P	H	G	Y	E	G	Q	G	P	E	H	S	S	A	R	L	E	R	Y	L	Q	L	C	A	E
Query Conservation																																						.	.	.	.	.
Alig confidence														.	.												.	.	.									.	.	.	.	.																																			.	.
Template Conservation														.	.												.	.	.																																																.	.
Template Sequence		V	G	M	G	A	Y	G	L	R	P	V	V	.	.	E	I	Q	F	A	D	Y	F	Y	P	A	.	.	.	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	G	G	G	I	Y	G	G	Q	T	H	S	Q	S	P	E	A	M	F	.	.	T	Q	V
Template Known Secondary structure								T						.	.			S		G	G	G		G	G	G	.	.	.						T	T	T	T	T					T	T	T	S	S													S	S	S			T	T	S	S				T				.	.		T	S
Template Predicted Secondary structure														.	.												.	.	.																																																.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.												.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	N	M	Q	V	C	V	P	S	T	P	A	Q	V	Y	H	M	L	R	R	Q	A	L	R	G	M	R	R	P	L	V	V	M	S	P	K	S	L	L	R	H	P	L	A	V	S	S	L	E	E	L	A	.	.	.	.	.	.	.	.	.	.	.	N	G	T	F	L	P	A	I	G	E	I	D	E	L	D	P	K
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L	I	A	S	I	E	C	D	.	.	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	K	A	A	I	T	R	P	G
Template Known Secondary structure		T	T								S															S	.	.	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	R	V	V	M	C	S	G	K	V	Y	Y	D	L	L	E	Q	R	R	K	N	N	Q	H	D	V	A	I	V	R	I	E	Q	L	Y	P	F	P	H	K	A	M	Q	E	V	L	Q	Q	F	A	H	V	K	D	F	V	W	C	Q	E	E	P	L	N	Q	G	A	W	Y	C	S	Q	H	H	F	R	E	V
Query Conservation
Alig confidence																								.	.																											.	.	.
Template Conservation																								.	.																											.	.	.
Template Sequence		N	D	V	S	V	L	T	Y	G	T	T	V	Y	V	A	Q	V	A	A	E	E	S	.	.	G	V	D	A	E	V	I	D	L	R	S	L	W	P	L	D	L	D	T	I	V	E	S	V	K	K	.	.	.	T	G	R	C	V	V	V	H	E	A	T	R	T	C	G	F	G	A	E	L	V	S	L	V	Q	E	H
Template Known Secondary structure		S	S							T	T													.	.										S				S													.	.	.		S										S	T	T	S
Template Predicted Secondary structure																								.	.																											.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		893	.	.	.			.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		I	P	F	G	.	.	A	S	L	R	Y	A	G	R	P	A	S	A	S	P	A	V	G	Y	M	S	V	H	Q	K	Q	Q	Q	D	L	V	N	D	A	L	N	V
Query Conservation						.	.
Alig confidence						.	.															.
Template Conservation																						.
Template Sequence		C	F	H	H	L	E	A	P	I	E	R	V	T	G	W	D	T	P	Y	P	.	H	A	Q	E	W	A	Y	F	P	G	P	S	R	V	G	A	A	L	K	K	V
Template Known Secondary structure		S	T	T	T			S									S	S				.	S	T	T					S
Template Predicted Secondary structure																						.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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