Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 16 Aligned Residues 310 % Identity 19% Template c1um9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form Resolution 2.20 Å

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		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	W	G	G	A	E	N	L	A	Y	A	T	L	V	D	E	G	I	P	V	R	L	S	G	E	D	S	G	R	G	T	F	F	H	R	H	A	V	I	H	N	Q	S	N	G	S	T	Y	T	P	L	Q	H	I	H	N	G	Q	G	A	F	R	V	W	D	S	V	L	S	E	E	A	V	L	A	F	E	Y	G
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	M	V	Q	A	L	N	R	A	L	D	E	E	M	A	K	D	P	R	V	V	V	L	G	E	D	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	G	G	V	F	L	V	T	E	G	L	L	Q	K	Y	G	P	D	R	V	M	D	T	P	L	S	E	A	A	I	V	G	A	A	L	G
Template Known Secondary structure																				T	T						T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			T	T	S	T	T	T	T							T	T	T						S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.															.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.						.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		Y	A	T	A	E	P	R	T	L	T	I	W	E	A	Q	F	G	D	F	A	N	G	A	Q	V	V	I	D	Q	F	I	S	S	G	.	.	.	.	.	E	Q	K	W	G	R	M	C	G	L	V	M	L	L	P	H	G	Y	E	G	Q	G	P	E	H	S	S	A	R	L	E	R	Y	L	Q	L	C	A	E	Q	N
Query Conservation																																				.	.	.	.	.
Alig confidence												.	.												.	.	.									.	.	.	.	.																																			.	.
Template Conservation												.	.												.	.	.																																																.	.
Template Sequence		M	A	A	H	G	L	R	P	V	A	.	.	E	I	Q	F	A	D	Y	I	F	P	G	.	.	.	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	V	R	M	P	S	G	G	G	V	R	G	G	H	H	H	S	Q	S	P	E	A	H	F	.	.	V	H	T	A	G
Template Known Secondary structure						T						.	.			S		G	G	G	G	G	G	G	.	.	.							T	T	T	T					T	T	T	S	S													S	S				S	S	S	S								.	.		T	S	T	T
Template Predicted Secondary structure												.	.												.	.	.																																																.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	V	C	V	P	S	T	P	A	Q	V	Y	H	M	L	R	R	Q	A	L	R	G	M	R	R	P	L	V	V	M	S	P	K	S	L	L	R	H	P	L	A	V	S	S	L	E	E	L	A	N	G	T	F	L	P	A	I	G	E	I	D	E	L	D	P	K	G	V	K	R	V	V	M	C	S	G	K	V	Y
Query Conservation
Alig confidence																									.	.																					.	.	.	.	.
Template Conservation																									.	.																					.	.	.	.	.
Template Sequence		L	K	V	V	A	V	S	T	P	Y	D	A	K	G	L	L	K	A	A	I	R	D	E	.	.	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	.	.	.	.	.	E	E	D	Y	T	L	P	I	G	K	A	A	L	R	R	E	G	K	D	L	T	L	I	C	Y	G	T	V	M	P
Template Known Secondary structure									S															S	.	.	S								G	G	G	S	S	S							.	.	.	.	.	S	S						T	T									S	S							G	G	G
Template Predicted Secondary structure																									.	.																					.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		826	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.			.	.	.	.	.	900	.	.
Predicted Secondary structure										.																																																														.	.
Query SS confidence										.																																																														.	.
Query Sequence		Y	D	L	L	E	Q	R	R	.	K	N	N	Q	H	D	V	A	I	V	R	I	E	Q	L	Y	P	F	P	H	K	A	M	Q	E	V	L	Q	Q	F	A	H	V	K	D	F	V	W	C	Q	E	E	P	L	N	Q	G	A	W	Y	C	S	Q	H	H	F	R	E	V	I	P	.	.	F	G	A	S	L	R	Y	A
Query Conservation										.																																																														.	.
Alig confidence										.																														.	.	.																														.	.
Template Conservation																																								.	.	.
Template Sequence		E	V	L	Q	A	A	A	E	L	A	K	A	G	V	S	A	E	V	L	D	L	R	T	L	M	P	W	D	Y	E	A	V	M	N	S	V	A	K	.	.	.	T	G	R	V	V	L	V	S	D	A	P	R	H	A	S	F	V	S	E	V	A	A	T	I	A	E	D	L	L	D	M	L	L	A	P	P	I	R	V
Template Known Secondary structure													T	T													T													.	.	.		S										S	T	T															G	G	G		S	S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		903	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	P	A	S	A	S	P	A	V	G	Y	M	S	V	H	Q	K	Q	Q	Q	D	L	V	N	D	A	L	N	V
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		T	G	F	D	T	P	Y	P	Y	.	A	Q	D	K	L	Y	L	P	T	V	T	R	I	L	N	A	A	K	R	A
Template Known Secondary structure					S	S				S	.	T	T					S
Template Predicted Secondary structure											.
Template SS confidence
		293	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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