Job Description P0AFG3 Confidence 100.00% Date Wed Jan 25 15:20:33 GMT 2012 Rank 14 Aligned Residues 485 % Identity 14% Template c1tkcA_ PDB info PDB header:transferase Chain: A: PDB Molecule:transketolase; PDBTitle: specificity of coenzyme binding in thiamin diphosphate2 dependent enzymes: crystal structures of yeast3 transketolase in complex with analogs of thiamin4 diphosphate Resolution 2.70 Å

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		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.								.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.																																						.
Query SS confidence																											.	.	.	.	.	.	.																																						.
Query Sequence		F	N	P	S	H	L	E	I	V	S	P	V	V	I	G	S	V	R	A	R	L	D	R	L	D	.	.	.	.	.	.	.	E	P	S	S	N	K	V	L	P	I	T	I	H	G	D	A	A	V	T	G	Q	G	V	V	Q	E	T	L	N	M	S	K	A	R	G	Y	E	.	V	G	G	T	V	R	I	V	I	N
Query Conservation																											.	.	.	.	.	.	.																																						.
Alig confidence																											.	.	.	.	.	.	.												.	.							.																		.		.	.	.
Template Conservation																																													.	.							.																				.	.	.
Template Sequence		V	T	T	G	P	L	G	Q	G	I	S	N	A	V	G	M	A	M	A	Q	A	N	L	A	A	T	Y	N	K	P	G	F	T	L	S	D	N	Y	T	Y	V	F	L	.	.	G	D	G	C	L	Q	.	E	G	I	S	S	E	A	S	S	L	A	G	H	L	K	L	G	N	L	.	.	.	I	A	I	Y	D	D
Template Known Secondary structure		S				S	T	T																						B	T	T	B												.	.							.	S													T	T		T	T		.	.	.
Template Predicted Secondary structure																																													.	.							.																				.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		N	Q	V	G	F	T	T	S	N	P	L	D	A	R	S	T	P	Y	C	T	D	I	G	K	M	V	Q	A	P	I	F	H	V	N	.	.	A	D	D	P	E	A	V	A	F	V	T	R	L	A	L	D	F	R	N	T	F	K	R	D	V	F	I	D	L	V	C	Y	R	R	H	G	H	N	E	A	D	E	P	S
Query Conservation																																				.	.
Alig confidence									.	.																										.	.															.	.	.
Template Conservation									.	.																																										.	.	.
Template Sequence		N	K	I	T	I	D	G	.	.	A	T	S	I	S	F	D	E	D	V	A	K	R	Y	E	A	Y	G	W	E	V	L	Y	V	E	N	G	N	E	D	L	A	G	I	A	K	A	I	A	Q	A	.	.	.	K	L	S	K	D	K	P	T	L	I	K	M	T	T	T	I	G	Y	G	S	L	H	A	G	S	H	S
Template Known Secondary structure			S	B		S	S	S	.	.	B							S										T							T	T	T	T	T													.	.	.	T	T		T	T	S										T	T	T	T	S	T	T	T	T	S	G	G
Template Predicted Secondary structure									.	.																																										.	.	.
Template SS confidence
		187	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
			468	.	470	.	.	.	.	.	.	.	.	.																480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	A	T	Q	P	L	M	Y	Q	K	I	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	T	P	R	K	I	Y	A	D	K	L	E	Q	E	K	V	A	T	L	E	D	A	T	E	M	V	N	L	Y	R	D	A	L	D	A	G	D	C	V	V	A	E	W	R	P	M	N	M	H	S	F
Query Conservation		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.
Template Sequence		V	H	G	A	P	L	K	A	D	D	V	K	Q	L	K	S	K	F	G	F	N	P	D	K	S	F	V	V	P	Q	E	V	Y	D	H	Y	Q	K	T	I	.	.	.	.	.	.	.	L	K	P	G	V	E	A	N	N	K	W	N	K	L	F	S	E	Y	Q	K	K	F	P	E	L	G	A	E	L	A	R	R	L
Template Known Secondary structure		G	G	S	S															T	S		T	T			S														T	.	.	.	.	.	.	.																						S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	S	P	Y	L	N	H	E	W	D	E	E	Y	P	N	K	V	E	M	K	R	L	Q	E	L	A	K	R	I	S	T	V	P	E	A	V	E	M	Q	S	R	V	A	K	I	Y	G	D	R	Q	A	M	A	A	G	E	K	L	F	D	W	G	G	A	E	N	L	A	Y	A	T	L	V	D	E	G	I	P	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	Q	L	P	A	N	W	E	S	K	L	P	T	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	D	S	A	V	A	T	R	K	L	S	E	T	V	L	E	D	V	Y	N	Q	L	P	E	L
Template Known Secondary structure			T				T	T	G	G	G	G	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		T	T		T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																																							.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	S	G	E	D	S	G	R	G	T	F	F	H	R	H	A	V	I	H	N	Q	S	N	G	S	T	Y	T	P	L	Q	H	I	H	N	G	Q	G	A	F	R	V	W	D	S	V	L	S	E	E	A	V	L	A	F	E	Y	G	Y	A	T	A	E	P	R	T	L	T	I	W	E	A	Q	F	G	D	F	A	N
Query Conservation
Alig confidence														.	.	.	.	.	.	.																				.																																			.
Template Conservation														.	.	.	.	.	.	.																				.																																			.
Template Sequence		I	G	G	S	A	D	L	T	P	S	N	L	.	.	.	.	.	.	.	T	R	W	K	E	A	L	D	F	Q	P	P	S	S	G	S	G	N	Y	.	S	G	R	Y	I	R	Y	G	I	R	E	H	A	M	G	A	I	M	N	G	I	S	A	F	G	A	N	Y	K	P	Y	G	G	T	.	F	L	N	F	V	S
Template Known Secondary structure						S	S						T	.	.	.	.	.	.	.				T	T			B	B			G	G	G	S	S		B	T	.	T								S																	T	T								.
Template Predicted Secondary structure														.	.	.	.	.	.	.																				.																																			.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.								.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.		.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		G	A	Q	V	V	I	D	Q	F	I	S	S	G	E	Q	K	W	G	R	M	C	G	L	V	M	L	L	P	H	G	Y	E	G	Q	.	G	P	E	H	S	S	A	R	L	E	R	Y	L	Q	L	C	A	E	Q	N	M	Q	V	C	V	P	S	T	P	A	Q	V	Y	H	M	L	R	R	Q	A	L	R	G	M	R
Query Conservation																																				.
Alig confidence				.	.	.								.	.																					.														.	.																													.	.
Template Conservation				.	.	.								.	.																																			.	.																													.	.
Template Sequence		Y	A	.	.	.	A	G	A	V	R	L	S	.	.	A	L	S	G	H	P	V	I	W	V	A	T	H	D	S	I	G	V	G	E	D	G	P	T	H	Q	P	I	E	T	L	A	H	F	.	.	R	S	L	P	N	I	Q	V	W	R	P	A	D	G	N	E	V	S	A	A	Y	K	N	S	L	E	S	K	.	.
Template Known Secondary structure				.	.	.								.	.				T											S	G	G	G		T	T		T	T	S	S		S	S						.	.	T	T	S	T	T								S															S	.	.
Template Predicted Secondary structure				.	.	.								.	.																																			.	.																													.	.
Template SS confidence
		448	.				450	.	.	.	.	.	.			.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490			.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		771		.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																																															.
Query SS confidence			.																																																															.
Query Sequence		R	.	P	L	V	V	M	S	P	K	S	L	L	R	H	P	L	A	V	S	S	L	E	E	L	A	N	G	T	F	L	P	A	I	G	E	I	D	E	L	D	P	K	G	V	K	R	V	V	M	C	S	G	K	V	Y	Y	D	L	L	E	Q	R	R	.	K	N	N	Q	H	D	V	A	I	V	R	I	E	Q	L
Query Conservation			.																																																															.
Alig confidence			.																														.	.	.	.	.	.	.																											.
Template Conservation																																	.	.	.	.	.	.	.
Template Sequence		H	T	P	S	I	I	A	L	S	R	Q	N	L	P	Q	L	E	G	S	S	I	E	S	A	S	K	G	G	Y	V	L	.	.	.	.	.	.	.	Q	D	V	A	N	P	D	I	I	L	V	A	T	G	S	E	V	S	L	S	V	E	A	A	K	T	L	A	A	K	N	I	K	A	R	V	V	S	L	P	D	F
Template Known Secondary structure		S									S	S						T	T							T	T	S					.	.	.	.	.	.	.				S	S		S							T																T	T									S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.								550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		849	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	F	P	H	K	A	M	Q	E	V	L	Q	Q	F	A	H	V	K	D	F	V	W	C	Q	E	E	P	L	N	Q	G	A	W	Y	C
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		F	T	F	D	K	Q	P	L	E	Y	R	L	S	V	L	P	D	N	.	V	P	I	M	S	V	E	V	L	A	T	T	C	W	G	K	Y
Template Known Secondary structure						T	S									S		S	S	.	S							S	S		G	G	G	G	G	G	T
Template Predicted Secondary structure																				.
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.