Job Description P0AFG3 Confidence 99.97% Date Wed Jan 25 15:20:33 GMT 2012 Rank 27 Aligned Residues 269 % Identity 23% Template c1ik6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate dehydrogenase; PDBTitle: 3d structure of the e1beta subunit of pyruvate2 dehydrogenase from the archeon pyrobaculum aerophilum Resolution 2.00 Å

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		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	W	G	G	A	E	N	L	A	Y	A	T	L	V	D	E	G	I	P	V	R	L	S	G	E	D	S	G	R	G	T	F	F	H	R	H	A	V	I	H	N	Q	S	N	G	S	T	Y	T	P	L	Q	H	I	H	N	G	Q	G	A	F	R	V	W	D	S	V	L	S	E	E	A	V	L	A	F	E	Y	G
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	M	A	K	A	I	N	M	A	L	H	E	E	M	E	R	D	E	R	V	V	V	L	G	E	L	V	T	E	G	L	Y	E	R	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	R	V	I	D	T	P	L	N	E	G	G	I	L	G	F	A	M	G
Template Known Secondary structure																				T	T								T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T						S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	T	A	E	P	R	T	L	T	I	W	E	A	Q	F	G	D	F	A	N	G	A	Q	V	V	I	D	Q	F	I	S	S	G	E	Q	K	W	G	R	M	C	G	L	V	M	L	L	P	H	G	Y	E	G	Q	G	P	E	H	S	S	A	R	L	E	R	Y	L	Q	L	C	A	E	Q	N	M	Q	V	C	V
Query Conservation
Alig confidence												.	.								.	.	.	.	.	.	.									.																.	.	.	.	.							.	.	.	.	.	.	.	.
Template Conservation												.	.								.	.	.	.	.	.	.									.																.	.	.	.	.							.	.	.	.	.	.	.	.
Template Sequence		M	A	M	A	G	L	K	P	V	A	.	.	E	I	Q	F	V	L	G	.	.	.	.	.	.	.	A	D	E	L	L	N	H	I	.	A	K	L	R	Y	K	A	P	L	V	V	R	T	P	V	.	.	.	.	.	G	S	P	E	A	I	.	.	.	.	.	.	.	.	F	V	H	T	P	G	L	V	V	V	M
Template Known Secondary structure					T	T						.	.								.	.	.	.	.	.	.									.																.	.	.	.	.							.	.	.	.	.	.	.	.			T		T	T
Template Predicted Secondary structure												.	.								.	.	.	.	.	.	.									.																.	.	.	.	.							.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90								.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	T	P	A	Q	V	Y	H	M	L	R	R	Q	A	L	R	G	M	R	R	P	L	V	V	M	S	P	K	S	L	L	R	H	P	L	A	V	S	S	L	E	E	L	A	N	G	T	F	L	P	A	I	G	E	I	D	E	L	D	P	K	G	V	K	R	V	V	M	C	S	G	K	V	Y	Y	D	L	L	E
Query Conservation
Alig confidence																				.	.																					.	.	.	.	.
Template Conservation																				.	.																					.	.	.	.	.
Template Sequence		P	S	T	P	Y	N	A	K	G	L	L	K	A	A	I	R	G	D	.	.	D	P	V	V	F	L	E	P	K	I	L	Y	R	A	P	R	E	E	V	P	.	.	.	.	.	E	G	D	Y	V	V	E	I	G	K	A	R	V	A	R	E	G	D	D	V	T	L	V	T	Y	G	A	V	V	H	K	A	L	E	A
Template Known Secondary structure				S														S	S	.	.	S								G	G	G	S	S								.	.	.	.	.		S	S					T	T									S	S							T	T
Template Predicted Secondary structure																				.	.																					.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		831	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.			.	.	.	.	900	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		Q	R	R	K	N	N	Q	H	D	V	A	I	V	R	I	E	Q	L	Y	P	F	P	H	K	A	M	Q	E	V	L	Q	Q	F	A	H	V	K	D	F	V	W	C	Q	E	E	P	L	N	Q	G	A	W	Y	C	S	Q	H	H	F	R	E	V	I	P	F	.	.	G	A	S	L	R	Y	A	G	R	P	A	S	A
Query Conservation																																																																			.	.
Alig confidence						.	.																											.	.	.																															.	.
Template Conservation						.	.																											.	.	.
Template Sequence		A	E	R	V	.	.	K	A	S	V	E	V	V	D	L	Q	T	L	N	P	L	D	F	D	T	V	L	K	S	V	S	K	.	.	.	T	G	R	L	I	I	A	H	D	S	P	K	T	G	G	L	G	A	E	V	R	A	L	V	A	E	K	A	L	D	R	L	T	A	P	V	I	R	L	A	G	P	D	V	P
Template Known Secondary structure				T	S	.	.	S	S												T	T												.	.	.												S	T	T	S													S	G	G	G		S	S
Template Predicted Secondary structure						.	.																											.	.	.
Template SS confidence
		225	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		909	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	A	V	G	Y	M	S	V	H	Q	K	Q	Q	Q	D	L	V	N	D	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	.	.	.	.	.	.	.	.	.	.	.	.	E	R	I	I	K	A	I
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		312	.													.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions