Job Description P0AGC3 Confidence 97.12% Date Thu Jan 5 11:28:44 GMT 2012 Rank 55 Aligned Residues 260 % Identity 13% Template c3mv3B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 3.25 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Y	A	Q	I	K	Q	A	W	D	N	R	Q	M	D	V	V	E	Q	M	M	P	G	.	L	K	D	Y	P	L	Y	P	Y	L	E	Y	R	Q	I	T	D	D	L	M	N	Q	P	A	V	T	V	T	N	F	V	R	A	N	P	T	L	P	P	A	R	T	L	Q	S	R	F	V	N	E	L	A	R	R	E	D	W
Query Conservation																								.
Alig confidence																								.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	N	I	K	Q	N	Y	Y	T	G	N	F	V	Q	C	L	Q	E	I	E	K	F	S	K	V	T	D	N	T	L	L	F	Y	K	A	K	T	L	L	A	L	G	Q	Y	Q	S	Q	.	.	.	.	.	.	.	.	.	.	D	P	T	S	K	L	G	K	V	L	D	L	Y	V	Q	F	L	D	T	K	N	I
Template Known Secondary structure										T	T	T											T	S	T	T																	S	S						.	.	.	.	.	.	.	.	.	.		S		S	T	T												T	S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50											.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	L	L	A	F	S	P	E	K	P	G	T	T	E	A	Q	C	N	Y	Y	Y	A	K	W	N	T	G	Q	S	E	E	A	W	Q	G	A	K	E	L	W	L	T	G	K	S	Q	P	N	A	C	D	K	L	F	S	V	W	R	A	S	G	K	Q	D	P	L	A	Y	L	E	R	I	R	L	A	M	K	A	G
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	E	N	L	L	K	D	K	Q	N	S	P	Y	E	L	Y	L	L	A	T	A	Q	A	I	L	G	D	L	D	K	S	L	E	T	C	V	E	G	I	D	N	D	E	A	E	G	T	T	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T	T	S																		T														T	T	T	T	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	G	L	V	T	V	L	A	G	Q	M	P	A	D	Y	Q	T	I	A	S	A	I	I	S	L	A	N	N	P	N	T	V	L	T	F	A	R	T	T	G	A	T	D	F	T	R	Q	M	A	A	V	A	F	A	S	V	A	R	Q	D	A	E	N	A	R	L	M	I	P	S	L	A	Q	A	Q	Q	L	N	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	L	A	I	E	V	A	L	L	N	N	N	V	S	T	A	S	T	I	F	D	N	Y	T	N	A	I	E	D	T	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T														T	T		T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
						276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure		.	.	.	.																																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	Q	I	Q	E	L	R	D	I	V	A	W	R	L	M	G	N	D	V	T	D	E	Q	A	K	W	R	D	D	A	I	M	R	S	Q	S	T	S	L	I	E	R	R	V	R	M	A	L	G	T	G	D	R	R	G	L	N	T	W	L	A	R	L	P	M	E	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.																																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	D	N	E	X	I	L	N	L	A	E	S	Y	I	K	F	A	T	N	K	E	T	A	T	S	N	F	Y	Y	Y	E	E	L	S	Q	T	F	P	T	W	K	T	Q	L	G	L	L	N	L	H	L	Q	Q	R	N	I	A	E	A	Q	G	I	V	E	L	L	L	S	D	Y	Y	S	V	E	Q	K	E	N	A
Template Known Secondary structure			S	S	T																	T	T	T	T	T													S		S														T	T														S					T	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	K	D	E	W	R	Y	W	Q	A	D	L	L	L	E	R	G	R	E	A	E	A	K	E	I	L	H	Q	L	M	Q	Q	R	G	F	Y	P	M	V	A	A
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		V	L	Y	K	P	T	F	L	A	N	Q	I	T	L	A	L	X	Q	G	L	.	.	D	T	E	D	L	T	N	Q	L	V	K	L	D	H	E	H	A	F	I	K	H
Template Known Secondary structure			T	T															T	T		.	.	T	T										T	T			S
Template Predicted Secondary structure																						.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions