Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGC3
Confidence97.41%DateThu Jan 5 11:28:44 GMT 2012
Rank44Aligned Residues195
% Identity10%Templatec2yhcA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   129130.........140.........150.........160.........170.........180.........190.........200........
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Query Sequence  TEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP
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Template Sequence  PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDL. . . . . . . . . . . . . . . IYAYYKNADLPLAQAAIDRFI
Template Known Secondary structure  T

TTSTT...............TT
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   12.......20.........30.........40.........50..... ....60.........70......
 
   209210.........220.........230.........240.........250.........260.........270.........280........
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Query Sequence  ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWR
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Template Sequence  RLNPTHPNIDYVMYM. . . . . . . . . . . . . . . . . . . RGLTNMALDDDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK
Template Known Secondary structure 
TT
TT...................


TT
TT
TT
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   77..80.........90. ........100.........110.........120.........130.......
 
   289290.........300.........310.........320.........330.........340....... ..350.........360.....
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Query Sequence  LMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE. . . WRYWQADLLLERGREAEA
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Template Sequence  DRL. . . . . . . . . . . . . . . . . . . . AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA
Template Known Secondary structure  ....................T
STTSTT
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   152.. .....160.........170.........180.........190.........200.........210.
 
   366...370.......
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Query Sequence  KEILHQLMQQRG
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Template Sequence  EKVAKIIAANSS
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S
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   212.......220...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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