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Job DescriptionP0AGC3
Confidence99.37%DateThu Jan 5 11:28:44 GMT 2012
Rank9Aligned Residues413
% Identity10%Templatec2xpiA_
PDB info PDB header:cell cycleChain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
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Query Sequence  LDEQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNEL
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Template Sequence  ASREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL
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TT


TT
T
GGGT
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   60.........70.........80.........90.........100.........110.........120.........130.........
 
   110.........120.... .... .130.........140.........150.........160.........170.........
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Query Sequence  ARREDWRGLLAFSPE. . . . KPGT. . . . . . TEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ
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Template Conservation     
    
   
                       
           
      

        
              
Template Sequence  VKLYDWQGALNLLGETNPFRMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE
Template Known Secondary structure  TT

SS
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SS

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S
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   180.... .....190.........200......
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Query Sequence  DPLAY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LERIRLAMKAGNTGLVTVLAGQ
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Template Sequence  EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK
Template Known Secondary structure  S
TGGGTTS
TTTTTSTTGGG
TT
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   251........260.........270.........280.........290.........300.........310.........320.........330
 
   207 ..210.........220.........230.........240..... ....250.........260.........270........
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Query Sequence  M. . . . . . . PADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMA. AVAFASVARQDAENARLMIPSLAQAQQLNEDQI
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Template Conservation                             
           
                     
                  
Template Sequence  ILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW
Template Known Secondary structure 
TT

TTT

TTSTT

TT
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   331........340.........350.........360.........370.........380.........390.........400.........410
 
   279280.........290.........300.........310.........320.........330.........340.........350........
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Query Sequence  QELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE
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Template Sequence  IGFAHSFAIE. . . GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN
Template Known Secondary structure  ...T
TTTT
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   411........420 .........430.........440.........450.........460.........470.........480.......
 
   359360.........370.........380.........390.........400.........410.........420.........430.......
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Query Sequence  RGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS.
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Template Sequence  KSDMQTAINHFQNALLLV. . . . . . . . . . . . . . . . . . . . . KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS
Template Known Secondary structure  TT
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SGGGTT
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   488.490.........500..... ....510.........520.........530.........540......
 
   438.440.........450.........460......
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Query Sequence  . KSKTEQAQLARYAFNNQWWDLSVQATIAG
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Template Conservation 
        

      
    
      
Template Sequence  TNDANVHTAIALVYLHKKIPGLAITHLHES
Template Known Secondary structure  S

TT
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   547..550.........560.........570......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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