Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGC3
Confidence95.64%DateThu Jan 5 11:28:44 GMT 2012
Rank77Aligned Residues252
% Identity12%Templatec1tnoI_
PDB info PDB header:transferaseChain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110.........120.... .....130.........140..... ....150.........160.........
Predicted Secondary structure 




....







.




Query SS confidence 





























. . . .




















.























Query Sequence  LPPARTLQSRFVNELARREDWRGLLAFSPE. . . . KPGTTEAQCNYYYAKWNTGQS. EEAWQGAKELWLTGKSQPNACDKL
Query Conservation   
    

   
  
         
     .... 
         
 

   
  .  
      

        
   
Alig confidence 





























....




















.























Template Conservation        
  
  
     
 
  

 
    
  

   


  
   
  
      

          

    
  
Template Sequence  SEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHR
Template Known Secondary structure 
TT



TT
TT


TT
Template Predicted Secondary structure 

















Template SS confidence 















































































   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   170.........180.........190.........200.........210.........220.........230.........240.........
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAF
Query Conservation         
 

 
    
            
  
   
         
   
                          

Alig confidence 





























...........






































Template Conservation    

        

    
 
  



  
...........
  
            

      
  

 
 


  
 
Template Sequence  RVLVEWLKDPSQELEFIADILNQDAKNYHA. . . . . . . . . . . WQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRH
Template Known Secondary structure  T

TTTTT
TT
...........TT

TT
TT
Template Predicted Secondary structure 





...........





Template SS confidence 















































































   173......180.........190.........200.. .......210.........220.........230.........240.
 
   250....... ..260.........270.........280.........290.........300.........310.........320..
Predicted Secondary structure 

.......














Query SS confidence 







. . . . . . .
































































Query Sequence  ASVARQDA. . . . . . . ENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA
Query Conservation   



 
 .......  
   
                    

           
                        
Alig confidence 







.......





























..
































Template Conservation   
               

     

   
 
 
 
 





  ..       
       
        
   
  

Template Sequence  FVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD. . RGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIY
Template Known Secondary structure  TTT
S
S
S

TT..T
GGG
TTTTTS

Template Predicted Secondary structure 








..









Template SS confidence 















































































   242.......250.........260.........270.........280...... ...290.........300.........310.........
 
   323......330.........340. ........350.........
Predicted Secondary structure  .........





.




Query SS confidence  . . . . . . . . .


















.

















Query Sequence  . . . . . . . . . LGTGDRRGLNTWLARLPME. AKEKDEWRYWQADLLLER
Query Conservation  .........
       
      
   .        






   
Alig confidence  .........


















.

















Template Conservation                   
      

   



  

      
   
Template Sequence  EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK
Template Known Secondary structure  TT
TTTTSGGGTT
Template Predicted Secondary structure 








Template SS confidence 














































   320.........330.........340.........350.........360......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions