Job Description P0AGC3 Confidence 95.64% Date Thu Jan 5 11:28:44 GMT 2012 Rank 77 Aligned Residues 252 % Identity 12% Template c1tnoI_ PDB info PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b Resolution 2.70 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.																						.
Query SS confidence																																.	.	.	.																						.
Query Sequence		L	P	P	A	R	T	L	Q	S	R	F	V	N	E	L	A	R	R	E	D	W	R	G	L	L	A	F	S	P	E	.	.	.	.	K	P	G	T	T	E	A	Q	C	N	Y	Y	Y	A	K	W	N	T	G	Q	S	.	E	E	A	W	Q	G	A	K	E	L	W	L	T	G	K	S	Q	P	N	A	C	D	K	L
Query Conservation																																.	.	.	.																						.
Alig confidence																																.	.	.	.																						.
Template Conservation
Template Sequence		S	E	K	F	R	D	V	Y	D	Y	F	R	A	V	L	Q	R	D	E	R	S	E	R	A	F	K	L	T	R	D	A	I	E	L	N	A	A	N	Y	T	V	W	H	F	R	R	V	L	L	R	S	L	Q	K	D	L	Q	E	E	M	N	Y	I	I	A	I	I	E	E	Q	P	K	N	Y	Q	V	W	H	H	R
Template Known Secondary structure																		T	T																		T	T															T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	V	W	R	A	S	G	K	Q	D	P	L	A	Y	L	E	R	I	R	L	A	M	K	A	G	N	T	G	L	V	T	V	L	A	G	Q	M	P	A	D	Y	Q	T	I	A	S	A	I	I	S	L	A	N	N	P	N	T	V	L	T	F	A	R	T	T	G	A	T	D	F	T	R	Q	M	A	A	V	A	F
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	L	V	E	W	L	K	D	P	S	Q	E	L	E	F	I	A	D	I	L	N	Q	D	A	K	N	Y	H	A	.	.	.	.	.	.	.	.	.	.	.	W	Q	H	R	Q	W	V	I	Q	E	F	R	L	W	D	N	E	L	Q	Y	V	D	Q	L	L	K	E	D	V	R	N	N	S	V	W	N	Q	R	H
Template Known Secondary structure									T			T	T									T	T	T		T	T					.	.	.	.	.	.	.	.	.	.	.											T	T			T	T													T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.												.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		250	.	.	.	.	.	.	.								.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure										.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.
Query Sequence		A	S	V	A	R	Q	D	A	.	.	.	.	.	.	.	E	N	A	R	L	M	I	P	S	L	A	Q	A	Q	Q	L	N	E	D	Q	I	Q	E	L	R	D	I	V	A	W	R	L	M	G	N	D	V	T	D	E	Q	A	K	W	R	D	D	A	I	M	R	S	Q	S	T	S	L	I	E	R	R	V	R	M	A
Query Conservation										.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																															.	.
Template Conservation																																															.	.
Template Sequence		F	V	I	S	N	T	T	G	Y	S	D	R	A	V	L	E	R	E	V	Q	Y	T	L	E	M	I	K	L	V	P	H	N	E	S	A	W	N	Y	L	K	G	I	L	Q	D	.	.	R	G	L	S	R	Y	P	N	L	L	N	Q	L	L	D	L	Q	P	S	H	S	S	P	Y	L	I	A	F	L	V	D	I	Y
Template Known Secondary structure						T	T	T		S		S																			S														T	T	.	.	T		G	G	G										T	T	T	T	T	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
											323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	.	.	.	.	.	.	L	G	T	G	D	R	R	G	L	N	T	W	L	A	R	L	P	M	E	.	A	K	E	K	D	E	W	R	Y	W	Q	A	D	L	L	L	E	R
Query Conservation		.	.	.	.	.	.	.	.	.																				.
Alig confidence		.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		E	D	M	L	E	N	Q	C	D	N	K	E	D	I	L	N	K	A	L	E	L	C	E	I	L	A	K	E	K	D	T	I	R	K	E	Y	W	R	Y	I	G	R	S	L	Q	S	K
Template Known Secondary structure							T	T		T	T																		T	T	S	G	G	G													T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions