Job Description P09155 Confidence 100.00% Date Thu Jan 5 11:02:04 GMT 2012 Rank 11 Aligned Residues 320 % Identity 13% Template c4ktqA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna Resolution 2.50 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		T	E	F	V	R	T	R	T	Y	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	L	A	L	I	D	P	L	G	I	T	D	W	S	.	.	.	.	.	P	L	K	A	I	L	R	D	P	S	I	T	K	F	L	H	A	G	S	E	D	L	E	V	F	L	N	V	F	G	E	L	P	Q	P	L	I	D	T
Query Conservation																																						.	.	.	.	.
Alig confidence																																						.	.	.	.	.
Template Conservation
Template Sequence		L	E	E	A	P	W	P	P	P	E	G	A	F	V	G	F	V	L	S	R	K	E	P	M	W	A	D	L	L	A	L	A	A	A	R	G	G	R	V	H	R	A	P	E	P	Y	K	A	L	R	D	L	K	E	A	R	G	L	L	A	K	D	L	S	V	L	A	L	R	E	G	L	G	L	P	P	G	D	D	P
Template Known Secondary structure							S				S	S								S	S	S		T	T	T											T	T						S	S					T	T	S		S	S	B		S	T	T											T	T					B
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L	M	V	E	T	E	A	S	G	W	L	P	A	A	L	D	E	C
Query Conservation
Alig confidence													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	L	A	Y	L	L	D	P	S	N	.	T	T	P	E	G	V	A	R	R	Y	G	G	E	W	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	G	E	R	A	A	L	S	E	R	L	F	A	N	L	W	G	R	L	E	G	E	E	R	L	L	W	L	Y	R	E	V
Template Known Secondary structure										T	T		.											S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T															T	T	T											T
Template Predicted Secondary structure													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400																				.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.																		.	230	.	.	.	.	.	.									.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query Sequence		R	L	M	Q	M	R	R	Q	E	V	V	A	P	E	D	A	W	R	D	I	T	N	A	W	Q	L	R	T	R	Q	L	A	C	L	Q	L	L	A	D	W	R	L	R	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	R	D	L	A	V	N	.	.	.	.	.	.	.	.	F	V
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	P	L	S	A	V	L	A	H	M	E	A	T	G	V	R	L	D	V	A	Y	L	R	A	L	S	L	E	V	A	E	E	I	A	R	L	E	A	E	V	F	R	L	A	G	H	P	F	N	L	N	S	R	D	Q	L	E	R	V	L	F	D	E	L	G	L	P	A	I	G	K	T	E	K	T	G	K	R	S
Template Known Secondary structure																			B																											T	T	S				S	S										T	T	T	S							B		S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	E	E	H	L	W	S	V	A	R	Y	M	P	G	S	L	G	E	L	D	S	L	G	L	S	G	S	E	I	R	F	H	G	K	T	L	L	A	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	Q	T	L	P	E	D	A	L	P	Q	P	M	L	N	L	M	D	M	P
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		T	S	A	A	V	L	E	A	L	R	E	A	H	P	I	.	V	E	K	I	L	Q	Y	R	E	L	T	K	L	K	S	T	Y	I	D	P	L	P	D	L	I	H	P	R	T	G	R	L	H	T	R	F	N	Q	T	A	T	A	T	G	R	L	S	S	S	D	P	N	L	Q	N	I	P	V	R	T	P	L	G	Q
Template Known Secondary structure									T	T	T	T	T				.																	T	T	T					T	B		T	T	T	S								S	S			S	S	S						S	S			S	S				S	S
Template Predicted Secondary structure																	.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	R	K	A	F	K	A	I	K	S	L	I	T	D	V	S	E	T	H	K	I	S	A	E	L	L	A	S	R	R	Q	I	N	Q	L	L	N	W	H	W	K	L	K	P	Q	N	N	L	P	E	L	I	S	G	W	R	G	E	L	M	A	E	A	L	H	N	L	L	Q	E	Y	P	Q
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		R	I	R	R	A	F	I	A	E	E	G	W	L	L	V	A	L	D	Y	S	Q	I	E	L	R	V	L	A	H	L	S	G	D	E	N	L	I	R	V	F	Q	E	G	R	D	I	H	T	E	T	A	.	.	.	.	.	.	S	W	M	F	G	V	P	R	E	A	V	D	P	L	M	R	R
Template Known Secondary structure						T	B	B			T	T									T	T																					T	T							T		.	.	.	.	.	.				T			S	T	T		S		T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.							.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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