Job Description P09155 Confidence 100.00% Date Thu Jan 5 11:02:04 GMT 2012 Rank 2 Aligned Residues 366 % Identity 22% Template c3cymA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis Resolution 2.10 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80
Predicted Secondary structure																				.																														.																						.	.
Query SS confidence																				.																														.																						.	.
Query Sequence		M	I	T	T	D	D	A	L	A	S	L	C	E	A	V	R	A	F	.	P	A	I	A	L	D	T	E	F	V	R	T	R	T	Y	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	.	L	A	L	I	D	P	L	G	I	T	D	W	S	P	L	K	A	I	L	R	D	.	.	P	S	I	T	K	F	L	H
Query Conservation																				.																														.																						.	.
Alig confidence																				.																														.																						.	.
Template Conservation
Template Sequence		V	I	D	T	L	P	A	F	R	D	Y	C	S	E	L	A	S	S	H	G	S	L	A	A	D	A	E	R	A	S	G	F	R	Y	G	H	E	D	W	L	V	Q	F	K	R	D	G	A	G	I	G	L	L	D	P	Q	A	L	A	A	A	G	A	D	W	N	D	F	N	R	A	V	G	D	A	V	W	I	L	H
Template Known Secondary structure					S													S													T	T	T	S	S	S												T	T													T	T											T	T						S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	S	E	D	L	E	V	F	L	N	V	F	G	E	L	P	Q	P	L	I	D	T	Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L
Query Conservation
Alig confidence											.																								.
Template Conservation											.																								.
Template Sequence		D	S	L	Q	D	L	P	G	F	.	D	E	L	G	M	E	P	Q	R	L	F	D	T	E	I	A	A	R	L	L	G	L	K	.	R	F	G	L	A	A	V	T	E	H	F	L	G	L	T	L	A	K	E	H	S	A	A	D	W	S	Y	R	P	L	P	R	D	W	R	N	Y	A	A	L	D	V	E	L	L	I
Template Known Secondary structure		S									.				T																T	T		S	.	S		S																		T	T			T	T		S	S															T
Template Predicted Secondary structure											.																								.
Template SS confidence
		98	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																						.														.	.
Query SS confidence																																						.														.	.
Query Sequence		P	I	T	A	K	L	M	V	E	T	E	A	S	G	W	L	P	A	A	L	D	E	C	R	L	M	Q	M	R	R	Q	E	V	V	A	P	.	E	D	A	W	R	D	I	T	N	A	W	Q	L	.	.	R	T	R	Q	L	A	C	L	Q	L	L	A	D	W	R	L	R	K	A	R	E	R	D	L	A	V	N	F
Query Conservation																																						.														.	.
Alig confidence																																						.														.	.
Template Conservation
Template Sequence		E	L	E	T	K	M	R	A	E	L	K	R	Q	G	K	M	E	W	A	Q	E	E	F	D	Y	A	L	K	E	G	L	G	P	R	K	E	H	L	I	P	W	M	H	V	S	H	I	T	E	V	M	R	D	R	Q	A	L	A	I	V	R	A	L	W	T	R	R	D	E	L	A	R	E	Y	D	I	A	P	T	L
Template Known Secondary structure															T																	S	S	S					S	S	G	G	G			T	T	G	G	G	G	T	T																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.																				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	R	E	E	H	L	W	S	V	A	R	Y	M	P	G	S	L	G	E	L	D	S	L	.	G	L	S	G	S	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	H	G	K	T	L	L	A	L	V	E	K	A	Q	T	L	P	E	D	A	L	P	Q	P	M	L	N	L
Query Conservation																										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	S	D	S	S	I	I	E	V	A	K	R	K	P	H	N	A	A	Q	F	R	S	I	R	S	I	N	E	R	V	R	I	H	T	D	S	E	Q	D	K	M	F	E	R	Y	A	P	I	Q	R	K	I	K	P	S	M	W	K	N	I	I	Q	D	A	L	A	L	P	P	S	E	W	P	D	S	A	P	K	S
Template Known Secondary structure			S															S						T		S	G	G	G	S							S	S	T							T	T					T	T	S														T	S		G	G	G	S						S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
							298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																					.	.	.
Query SS confidence		.	.	.	.	.																																																					.	.	.
Query Sequence		.	.	.	.	.	M	D	M	P	G	Y	R	K	A	F	K	A	I	K	S	L	I	T	D	V	S	E	T	H	K	I	S	A	E	L	L	A	S	R	R	Q	I	N	Q	L	L	N	W	H	W	K	L	K	P	Q	N	N	.	.	.	L	P	E	L	I	S	G	W	R	G	E	L	M	A	E	A	L	H	N	L
Query Conservation		.	.	.	.	.																																																					.	.	.
Alig confidence		.	.	.	.	.																																																					.	.	.
Template Conservation
Template Sequence		I	R	V	W	K	E	R	Y	P	E	R	L	Q	V	L	N	R	V	R	K	A	V	S	Q	I	A	E	D	T	R	T	P	V	E	I	V	I	K	P	Q	Y	L	R	N	L	C	W	T	D	E	P	R	K	R	D	V	A	R	F	L	S	E	Q	G	A	R	D	W	Q	V	S	L	V	A	E	S	V	S	R	A
Template Known Secondary structure																															T							S											S	S		G	G	G											T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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