Job Description P09155 Confidence 97.52% Date Thu Jan 5 11:02:04 GMT 2012 Rank 42 Aligned Residues 145 % Identity 18% Template c2p51A_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit Resolution 1.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																								.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	A	L	A	S	L	C	E	A	V	R	A	F	P	A	I	A	L	D	T	E	F	V	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	Y	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	L	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	E	M	N	L	I	M	S	L	I	E	R	Y	P	V	V	S	M	D	T	E	F	P	G	V	V	A	R	P	L	G	V	F	K	S	S	D	D	Y	H	Y	Q	T	L	R	A	N	V	D	S	L	K	I	I	Q	I	G	L	A	L	S	D	E	E	G	N	A	P	V	E	A	C	T	W	Q	F	N	F	T
Template Known Secondary structure												T	T	T	S																		S			S	S	S															S												T	T	S				T	T		S						B
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
																															54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	D	P	L	G	I	T	D	W	S	P	L	K	A	I	L	R	D	P	S	I	T	K	F	L	H	A	G	S	E	D	L	E	V	F	L	N	V	F	.	.	G	E	L	P	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.					.	.	.	.	.
Template Conservation
Template Sequence		F	N	L	Q	D	D	M	Y	A	P	E	S	I	E	L	L	T	K	S	G	I	D	F	K	K	H	Q	E	V	G	I	E	P	A	D	F	A	E	L	L	I	G	S	G	L	V	L	Q	E	E	V	T	W	I	T	F	H	S	G	Y	D	F	A	Y	L	L	K	A	M	T	Q	I	P	L	P	A	E	Y	E	E
Template Known Secondary structure				T	T	T	S													T	T											B											T	T	T	S	S	S		T	T						S	S															S				S	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
											98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	Q	P	L	I	D	T	Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L	M	V
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.															.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	K	I	L	C	I	Y	F	P	K	N	Y	D	I	K	Y	I	M	K	S	V	L	.	N	N	S	K	G	L	Q	D	I	A	D	D	L	Q	I	H	R	I	G	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	A	G	S	D	A	L	L	T	A	R	I	F	F	E	I	R	S
Template Known Secondary structure										S	S	S									T	T	T	T	.													T	T					S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.																	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		169	170
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		254	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions