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Job DescriptionP09155
Confidence100.00%DateThu Jan 5 11:02:04 GMT 2012
Rank3Aligned Residues286
% Identity26%Templatec2hbkA_
PDB info PDB header:hydrolase, gene regulationChain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60 .........70.........80.
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Query Sequence  YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI. TDWSPLKAILRDPSITKFLHA
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Template Sequence  PIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHG
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TTTTTTTGGGGT
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   213......220.........230.........240.........250.........260.........270.........280.........290..
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  GSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLP
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Template Sequence  AFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP. RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLN
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   293......300.........310.........320.... .....330.........340.........350.........360.........370.
 
   162.......170.........180.........190.... .....200.........210.........220......
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Query Sequence  ITAKLMVETEASGWLPAALDECRLMQMRRQEVV. . . . . . . . . . . . . . . APEDAWRDITNAWQLRTRQLACLQLLADWRLR
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Template Sequence  IYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWRDL
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   372.......380.........390.........400.........410.........420.........430.........440.........450.
 
   227..230.........240.........250.........260. ........270.........280.........
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Query Sequence  KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL. GLSGSEIRFHGKTLLALVEKAQTLPEDA
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Template Sequence  IARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNT
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   452.......460.........470.........480.........490.........500.........510.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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