Job Description P09155 Confidence 77.69% Date Thu Jan 5 11:02:04 GMT 2012 Rank 65 Aligned Residues 143 % Identity 17% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

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		24	.	.	.	.	.	30	.	.	.	.							.	.	.	.	.	40			.	.	.	.	.	.	.	.																																					.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.							.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.							.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	A	L	D	T	E	F	V	R	T	.	.	.	.	.	.	R	T	Y	Y	P	Q	.	.	L	G	L	I	Q	L	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	H	L	A	L	I	D	P	L	G
Query Conservation													.	.	.	.	.	.							.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.							.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	G	L	P	T	P	V	V	L	E	F	D	S	E
Template Known Secondary structure													S	S		T	T	S				T	T	S	T	T	S												T	T	T												S															T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.																																					.	.	.	.	.	100	.
Predicted Secondary structure													.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	D	W	S	P	L	K	A	I	L	.	.	R	D	P	S	I	T	K	F	L	H	A	G	S	E	D	L	E	V	F	L	N	V	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	Q	P	L	I
Query Conservation													.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	I	G	Q	S	H	F	Q	K	R	S	K	I	K	V	N	G	M	V	N	I
Template Known Secondary structure																		S					S	S	T	T	T	T											T	T	T					T	T	S	S	S	B	S	S	S								S	S			T	T	S							B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.																					.
Query SS confidence																														.	.	.																					.
Query Sequence		D	T	Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	.	.	.	L	D	K	S	E	S	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	.	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L
Query Conservation																														.	.	.																					.
Alig confidence																														.	.	.																					.
Template Conservation
Template Sequence		D	M	Y	G	I	I	T	D	K	I	K	L	S	S	Y	K	L	N	A	V	A	E	A	V	L	K	D	K	K	K	D	L	S	Y	R	D	I	P	A	Y	Y	A	T	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L	F	F	K	F
Template Known Secondary structure									T	T				S			S																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions