Job Description P09155 Confidence 76.27% Date Thu Jan 5 11:02:04 GMT 2012 Rank 66 Aligned Residues 146 % Identity 16% Template c2dtuA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog Resolution 2.37 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.								.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	A	F	P	A	I	A	L	D	T	E	F	V	R	T	R	T	Y	.	.	.	.	.	.	.	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	L	A	L	I	D	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	K	I	R	V	A	N	F	D	I	E	V	T	S	P	D	G	F	P	E	P	S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	V	F	D	L	L	N	S	P	Y	G	N	V	E	E	W	S	I	E	I	A	A	K	L	Q	E	Q	G	G	D	E	V	P	S	E	I	I	D
Template Known Secondary structure		G	G	G	S												S	S	S	S			T	T	T			S										T	T	T	T											T	T													S		G	G	G	T						T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
											59	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.																											.	.	.	.	.	.	100
Predicted Secondary structure		.	.	.	.	.	.	.	.	.													.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.													.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	I	T	D	W	S	P	L	K	A	I	L	.	.	R	D	P	S	I	T	K	F	L	H	A	G	S	.	E	D	L	E	V	F	L	N	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	L	P	Q	P	L
Query Conservation		.	.	.	.	.	.	.	.	.													.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.													.	.							.							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.
Template Sequence		K	I	I	Y	M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q	Q	K	T	P	V	I	L	.	T	G	W	N	V	E	S	F	A	I	P	Y	V	Y	N	R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	G	E	I	I	T	L	F	G	I	S	V
Template Known Secondary structure		G							S	S															T			S			.			S	S	T	T	T	T													S						G	G	G	S	T	T	S						S	S	S					T	T
Template Predicted Secondary structure																															.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																.	.																			.
Query SS confidence																.	.																			.
Query Sequence		I	D	T	Q	I	L	A	A	F	C	G	R	P	M	.	.	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	.	S	E	S	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L
Query Conservation																.	.																			.
Alig confidence																.	.																			.													.
Template Conservation																																																	.
Template Sequence		L	D	Y	I	D	L	Y	K	K	F	S	F	T	N	Q	P	S	Y	S	L	D	Y	I	S	E	F	E	L	N	V	G	K	L	K	Y	D	G	P	I	S	K	L	R	E	S	N	H	.	Q	R	Y	I	S	Y	N	I	I	A	V	Y	R	V	L	Q	I	D	A	K	R
Template Known Secondary structure												S					S													S			S				S	S		G	G	G							.
Template Predicted Secondary structure																																																	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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