Job Description P09155 Confidence 100.00% Date Thu Jan 5 11:02:04 GMT 2012 Rank 8 Aligned Residues 360 % Identity 14% Template c1njzA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	Y	Q	M	I	T	T	D	D	A	L	A	S	L	C	E	A	V	R	A	F	P	A	I	A	L	D	T	E	F	V	R	T	R	T	Y	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	L	A	L	I	D	P	L	G	I	T	D	W	S	P	L	K	A	I	L	R	D	P	S	I	T	K	F	L	H
Query Conservation
Alig confidence										.	.	.	.	.	.								.
Template Conservation										.	.	.	.	.	.								.
Template Sequence		M	A	F	T	L	A	D	R	.	.	.	.	.	.	V	T	E	E	M	L	A	.	D	K	A	A	L	V	V	E	V	V	E	E	N	Y	H	D	A	P	I	V	G	I	A	V	V	N	E	H	G	R	F	F	L	R	P	E	T	A	L	A	D	P	Q	F	V	A	W	L	G	D	E	T	K	K	K	S	M	F
Template Known Secondary structure								S	S	.	.	.	.	.	.			G	G	G			.	S										S	S	S		T	T											T	T											T	T											T	T	S					S
Template Predicted Secondary structure										.	.	.	.	.	.								.
Template SS confidence
		299	300	.	.	.	.	.	.							.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																					.																					.	.	.
Query SS confidence																																					.																					.	.	.
Query Sequence		A	G	S	E	D	L	E	V	F	L	N	V	F	G	E	L	P	Q	P	L	I	D	T	Q	I	L	A	A	F	C	G	R	P	M	S	.	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	.	.	.	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V
Query Conservation																																					.																					.	.	.
Alig confidence																																					.																					.	.	.
Template Conservation
Template Sequence		D	S	K	R	A	A	V	A	L	K	W	K	G	I	E	L	C	G	V	S	F	D	L	L	L	A	A	Y	L	L	D	P	A	Q	G	V	D	D	V	A	A	A	A	K	M	K	Q	Y	E	A	V	R	P	D	E	A	V	Y	G	K	G	A	K	R	A	V	P	D	E	P	V	L	A	E	H	L	V	R	K	A
Template Known Secondary structure		S											T	T																			G	G	G				S							T	T	T			S	S									S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		W	Y	L	L	P	I	T	A	K	L	M	V	E	T	E	A	S	G	W	L	P	A	A	L	D	E	C	R	L	M	Q	M	R	R	Q	E	V	V	A	P	E	D	A	W	R	D	I	T	N	A	W	Q	L	R	T	R	Q	L	A	C	L	Q	L	L	A	D	W	R	L	R	K	A	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																							.																																																			.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		A	A	I	W	E	L	E	R	P	F	L	D	E	L	R	R	N	E	Q	D	R	.	L	L	V	E	L	E	Q	P	L	S	S	I	L	A	E	M	E	F	A	G	V	K	V	D	T	K	R	L	E	Q	M	G	K	E	L	A	E	Q	L	G	T	V	E	Q	R	I	Y	E	L	A	G	Q	E	F	N	I	N	S
Template Known Secondary structure																		T	T				.					T																																														T	S				T	T
Template Predicted Secondary structure																							.
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
											229	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	E	R	D	L	A	V	N	F	.	.	.	.	.	.	V	V	R	E	E	H	L	W	S	V	A	R	Y	M	P	G	S	L	G	E	L	D	S	L	G	L	S	G	S	E	I	R	F	H	G	K	T	L	L	A	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.										.	.	.	.	.	.																	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		P	K	Q	L	G	V	I	L	F	E	K	L	Q	L	P	V	L	K	K	T	K	T	G	Y	S	T	S	A	D	V	L	E	K	L	A	P	Y	H	E	I	.	V	E	N	I	L	H	Y	R	Q	L	G	K	L	Q	S	T	Y	I	E	G	L	L	K	V	V	R	P	D	T	K	K	V	H	T	I	F	N	Q	A
Template Known Secondary structure											T	T	S					S		B		S	S	S	B								T	T	T	G	G	G				.																	T								S		T	T	T									S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570		.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.																																		.
Query SS confidence		.	.	.																																		.
Query Sequence		.	.	.	E	K	A	Q	T	L	P	E	D	A	L	P	Q	P	M	L	N	L	M	D	M	P	G	Y	R	K	A	F	K	A	I	K	S	.	L	I	T	D	V	S	E	T	H	K	I	S	A	E	L	L	A	S	R	R	Q	I	N	Q	L	L	N	W	H	W	K	L	K	P	Q	N	N	L	P	E	L	I	S
Query Conservation		.	.	.																																		.
Alig confidence		.	.	.																																		.																																									.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		L	T	Q	T	G	R	L	S	S	T	E	P	N	L	Q	N	I	P	I	R	L	E	E	G	R	K	I	R	Q	A	F	V	P	S	E	S	D	W	L	I	F	A	A	D	Y	S	Q	I	E	L	R	V	L	A	H	I	A	E	D	D	N	L	M	E	A	F	R	R	D	L	D	I	H	T	K	T	A	.	.	.
Template Known Secondary structure				S	S	S						S	S		T	T					S	S					G	G	G	G	G				S	S	T	T									S	S											T										T	T									.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	R	G	E	L	M	A	E	A	L	H	N	L	L	Q	E	Y	P	Q
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	M	D	I	F	Q	V	S	E	D	E	V	T	P	N	M	R	R
Template Known Secondary structure		.	.	.					T			G	G	G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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