Job Description P09155 Confidence 93.58% Date Thu Jan 5 11:02:04 GMT 2012 Rank 53 Aligned Residues 150 % Identity 16% Template c1d5aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.													.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure														.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence														.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		P	A	I	A	L	D	T	E	F	V	R	T	.	.	.	R	T	Y	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	L	A	L	I	D	P	L	G	I	T	D	.	.	.	.	.	.	.	.	.	.	.	.	W	S	P	L	K	A	I	L	.	.	R	D	P	S	I	T	K	F	L	H	A	G	S	E	D
Query Conservation														.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence														.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		R	M	L	A	F	D	I	E	T	L	A	H	A	G	A	A	A	G	A	G	P	I	L	M	I	S	Y	A	D	E	E	G	A	R	V	I	T	W	K	N	I	D	L	P	Y	V	E	S	V	S	T	E	K	E	M	I	K	R	F	L	K	V	I	Q	E	K	D	P	D	V	L	I	T	Y	N	G	D	N	F	D
Template Known Secondary structure												S			S	S		S	S		S										T	T							S	S					T	T					S	S																		S					S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		86	.	.	.	90	.	.	.	.																												.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Query Sequence		L	E	V	F	L	N	V	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	Q	P	L	I	D	T	Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	.	.	.	L	D	K	S	E	S
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation
Template Sequence		F	A	Y	L	K	K	R	S	E	M	L	G	V	K	F	I	L	G	R	D	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	N	L	P	T	Y	T	L	E	T	V	Y	E	P	V	F	G	Q	P	A	E	K	V	Y	A	E	E	I
Template Known Secondary structure											T	T	T						S	T	T	S								S	S	S	S						T	T	S																S	S											S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L	M	V	E	T	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	A	W	A	S	G	E	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	A	T	Y	E	L	G	K	E	F	F	P	M	E	A	Q
Template Known Secondary structure							S	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions