 |
Job Description | Q06067 | Confidence | 97.97% | Date | Thu Jan 5 12:33:25 GMT 2012 |
Rank | 60 | Aligned Residues | 91 |
% Identity | 21% | Template | c3g7bB_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:dna gyrase subunit b; |
PDBTitle: staphylococcus aureus gyrase b co-complex with inhibitor
|
Resolution | 2.30 Å |
|
 |
  |   |
496 | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | R | E | L | L | K | Q | V | L | L | N | I | L | I | N | A | V | Q | A | I | S | A | R | G | K | I | R | I | Q | T | W | Q | Y | S | D | S | Q | Q | A | I | S | I | E | D | N | G | C | G | I | D | L | S | L | Q | K | K | I | F | D | P | F | F | T | T | K | A | S | G | T | G | L | G | L | A | L | S | Q | R | I | I |
Query Conservation |   |
|   |   |   |
|   |   |
|
|   |
|
|
|   |
|
|
|   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
Template Conservation |   |
  |   |   |
|
|   |   |   |
|   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|   |
|   |
|   |   |   |
| . | . |   |
|   |
|   |
|
|
|   |
|
|
| . | . | . | . | . | . | . |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   | . | . |
|   |
Template Sequence |   |
S | E | R | G | L | H | H | L | V | W | E | I | V | D | N | S | I | D | E | A | L | A | G | Y | A | N | Q | I | E | V | V | I | E | K | D | N | . |
. |
W | I | K | V | T | D | N | G | R | G | I | P | . |
. |
. |
. |
. |
. |
. |
V | D | I | Q | E | K | M | G | R | P | A | V | E | V | I | L | T | S | S | . |
. |
V | V |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
|  |  |  |  |  |  |
| G | G | G | . | . |
|  |  |  |  |  |
| S | S |
|
|
| . | . | . | . | . | . | . |
| S | B |
| T | T | T | S |
| B |  |  |  |  |  |  | T | T |
| . | . |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . |
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | |
|
. | . | . | . | 80 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | |
|
. | . |
  |
  |   |
576 | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | H | Q | G | D | I | R | V | A | S | L | P | G | Y | G | A | T | F | T | L | I | L |
Query Conservation |   |
  |   |   |   |
|   |
|   |
|   |
|   |   |
|   |
|
|   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |   |
|   |
|   |   |   | . |
|   |   |   |   |   |   |   |
Template Sequence |   |
N | A | L | S | Q | D | L | E | V | Y | V | H | R | N | . |
E | T | I | Y | H | Q | A | Y |
Template Known Secondary structure |   |
 |  | T |  |  |  |  |  |  |  |  |  |  | T | . | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
132 | . | . | . | . | . | . | . | 140 | . | . | . | . | . | |
. | . | . | . | 150 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|