Job Description Q06067 Confidence 100.00% Date Thu Jan 5 12:33:25 GMT 2012 Rank 5 Aligned Residues 231 % Identity 16% Template c3d2rB_ PDB info PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp Resolution 2.03 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.								.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.
Query Sequence		Q	R	R	M	A	Q	A	E	R	L	A	T	L	G	E	L	M	A	G	V	A	H	E	V	R	N	P	L	T	A	I	R	G	Y	V	Q	I	L	R	.	.	.	.	.	.	.	Q	Q	T	S	D	P	I	H	Q	E	Y	L	S	V	V	L	K	E	I	D	S	I	N	K	V	I	Q	Q	L	L	E	F	S	R
Query Conservation																																									.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	H	E	K	S	P	D	D	Q	K	A	L	S	D	F	V	D	T	L	I	K	V	R	N	R	H	H	N	V	V	P	T	M	A	Q	G	I	I	E	Y	K	A	C	T	V	D	P	V	T	N	Q	N	L	Q	Y	F	L	D	R	F	Y	M	N	R	I	S	T	R	M	L	M	N	Q	H	I	L	I	F	S
Template Known Secondary structure		G	G	G	G	S		T	T																			T	T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		450	.	.	.	.	.									.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.									.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		P	R	H	S	Q	W	.	.	.	.	.	.	.	.	Q	Q	V	S	L	N	A	L	V	E	E	T	L	V	L	V	Q	T	A	G	V	Q	.	.	.	.	.	.	.	.	A	R	V	D	F	I	S	E	L	D	N	E	L	S	P	I	N	A	D	R	E	L	L	K	Q	V	L	L	N	I	L	I	N	A	V	Q
Query Conservation								.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	Q	T	G	N	P	S	H	I	G	S	I	D	P	N	C	D	V	V	A	V	V	Q	D	A	F	E	C	S	R	M	L	C	D	Q	Y	Y	L	S	S	P	E	L	K	L	T	Q	V	N	G	K	F	P	D	Q	P	I	H	I	V	Y	V	P	S	H	L	H	H	M	L	F	E	L	F	K	N	A	M	R
Template Known Secondary structure		S	S					T	T	S	B	T	T	B																										S												S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		514	.								.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.					.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																																															.	.	.	.
Query SS confidence				.	.	.	.	.	.	.																																															.	.	.	.
Query Sequence		A	I	.	.	.	.	.	.	.	S	A	R	G	K	I	R	I	Q	T	W	Q	Y	S	D	S	Q	Q	A	I	S	I	E	D	N	G	C	G	I	D	L	S	L	Q	K	K	I	F	D	P	F	F	T	T	K	A	.	.	.	.	S	G	T	G	L	G	L	A	L	S	Q	R	I	I	N	A	H	Q	G	D	I
Query Conservation				.	.	.	.	.	.	.																																															.	.	.	.
Alig confidence				.	.	.	.	.	.	.																.																															.	.	.	.
Template Conservation																										.
Template Sequence		A	T	V	E	H	Q	E	N	Q	P	S	L	T	P	I	E	V	I	V	V	L	G	K	E	.	D	L	T	I	K	I	S	D	R	G	G	G	V	P	L	R	I	I	D	R	L	F	S	Y	T	Y	S	T	A	P	T	P	P	L	A	G	F	G	Y	G	L	P	I	S	R	L	Y	A	K	Y	F	Q	G	D	L
Template Known Secondary structure							T	T	T	S	S	S												S	S	.										S					G	G	G	T	T	G	G	G	S	T	T			S	S						S	S	S														T	T
Template Predicted Secondary structure																										.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		R	V	A	S	L	P	G	Y	G	A	T	F	T	L	I	L	P	.	I	N	P	Q	G	N	Q	T	V
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		N	L	Y	S	L	S	G	Y	G	T	D	A	I	I	Y	L	K	A	L	S	S	E	S	I	E	K	L
Template Known Secondary structure							T	T	T										S	S	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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