Job Description Q06067 Confidence 100.00% Date Thu Jan 5 12:33:25 GMT 2012 Rank 1 Aligned Residues 328 % Identity 28% Template c3a0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	L	I	I	E	N	A	A	D	G	V	I	A	I	D	R	Q	G	D	V	T	T	M	N	P	A	A	E	V	I	T	G	Y	Q	R	H	E	L	V	G	Q	P	Y	S	M	L	F	D	N	T	Q	F	Y	S	P	V	L	D	T	L	E	H	G	T	E	H	V	A	L	E	I	S	F	P	G	R	D	R	T
Query Conservation
Alig confidence																																																																					.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		S	E	S	I	L	E	S	L	E	T	A	I	I	T	L	S	K	D	G	R	I	T	E	W	N	K	K	A	E	Q	L	F	G	L	K	K	E	N	V	L	G	R	R	L	K	D	L	P	D	F	E	E	I	G	S	V	A	E	S	V	F	E	N	K	E	P	V	.	.	.	.	F	L	N	F	Y	K	F	G	E
Template Known Secondary structure				S	S	G	G	G	S	S	S							S	S	S	B		S		B									S			S	T	T	T	T	T		B	S	T	T	S	T	T	T	T																	.	.	.	.							B	T	T
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.					.	.	.	.	.	.	.	490	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.
Predicted Secondary structure																					.																																																								.
Query SS confidence																					.																																																								.
Query Sequence		I	E	L	S	V	T	T	S	R	I	H	N	T	H	G	E	M	I	G	.	A	L	V	I	F	S	D	L	T	A	R	K	E	T	Q	R	R	M	A	Q	A	E	R	L	A	T	L	G	E	L	M	A	G	V	A	H	E	V	R	N	P	L	T	A	I	R	G	Y	V	Q	I	L	R	Q	Q	.	T	S	D	P
Query Conservation																					.																																																								.
Alig confidence																					.																																																								.
Template Conservation
Template Sequence		R	Y	F	N	I	R	F	S	P	F	R	N	A	K	T	Q	L	L	E	G	V	I	I	T	I	D	D	V	T	E	L	Y	K	Y	E	E	E	R	K	R	R	E	R	L	S	I	L	G	E	M	T	A	R	V	A	H	E	I	R	N	P	I	T	I	I	G	G	F	I	M	R	M	K	K	H	L	D	D	P	E
Template Known Secondary structure		B												T	T	T	T	S	S											S	T	T	T	T	T	T	T	T	T	T																																		T	T	S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	Q	E	Y	L	S	V	V	L	K	E	I	D	S	I	N	K	V	I	Q	Q	L	L	E	F	S	R	P	R	H	S	Q	W	Q	Q	V	S	L	N	A	L	V	E	E	T	L	V	L	V	Q	T	A	G	V	Q	A	R	V	D	F	I	S	E	L	D	N	E	L	S	P	I	N	A	D	R	E	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	K	K	Y	I	N	I	I	T	N	E	L	S	R	L	E	T	I	V	K	E	I	L	E	Y	S	K	E	R	V	L	E	F	T	E	F	N	L	N	E	L	I	R	E	V	Y	V	L	F	E	E	K	I	R	K	M	N	I	D	F	C	F	E	T	D	N	E	D	L	R	V	E	A	D	R	T	R	I	K
Template Known Secondary structure			T	T																																																				T	T	T	T								S		S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.		.	.	.	580
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		Q	V	L	L	N	I	L	I	N	A	V	Q	A	I	S	A	R	G	K	I	R	I	Q	T	W	Q	Y	S	D	S	Q	Q	A	I	S	I	E	D	N	G	C	G	I	D	L	S	L	Q	K	K	I	F	D	P	F	F	T	T	K	A	S	G	T	G	L	G	L	A	L	S	Q	R	I	I	N	.	A	H	Q	G
Query Conservation																																																																													.
Alig confidence																															.																											.	.	.	.	.	.														.
Template Conservation																															.																											.	.	.	.	.	.
Template Sequence		Q	V	L	I	N	L	V	Q	N	A	I	E	A	T	G	E	N	G	K	I	K	I	T	S	E	D	M	Y	T	.	K	V	R	V	S	V	W	N	S	G	P	P	I	P	E	E	L	K	E	K	I	F	S	P	F	F	.	.	.	.	.	.	T	T	L	G	L	S	I	C	R	K	I	I	E	D	E	H	G	G
Template Known Secondary structure									T					T	T		T	T											T	T	.										S					G	G	G	G	T	T	T	S	S	S			.	.	.	.	.	.						T									T	T		S
Template Predicted Secondary structure																															.																											.	.	.	.	.	.
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.		.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.							.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	R	V	A	S	L	P	G	Y	G	A	T	F	T	L	I	L	P	I	N	P	Q
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		K	I	W	T	E	N	R	.	E	N	G	V	V	F	I	F	E	I	P	K	T	P	E
Template Known Secondary structure		B							.	S	S										S		T	T
Template Predicted Secondary structure									.
Template SS confidence
		732	.	.	.	.	.	.		.	740	.	.	.	.	.	.	.	.	.	750	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions