Job Description Q06067 Confidence 100.00% Date Thu Jan 5 12:33:25 GMT 2012 Rank 3 Aligned Residues 226 % Identity 16% Template c2q8fA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1 Resolution 2.03 Å

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		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.							.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		T	Q	R	R	M	A	Q	A	E	R	L	A	T	L	G	E	L	M	A	G	V	A	H	E	V	R	N	P	L	T	A	I	R	G	Y	V	Q	I	L	R	.	.	.	.	.	.	Q	Q	T	S	D	P	I	H	Q	E	Y	L	S	V	V	L	K	E	I	D	S	I	N	K	V	I	Q	Q	L	L	E	F	S	R
Query Conservation																																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	F	K	D	K	S	A	E	D	A	K	A	I	Y	D	F	T	D	T	V	I	R	I	R	N	R	H	N	D	V	I	P	T	M	A	Q	G	V	I	E	Y	K	E	S	F	D	P	V	T	S	Q	N	V	Q	Y	F	L	D	R	F	Y	M	S	R	I	S	I	R	M	L	L	N	Q	H	S	L	L	F	G
Template Known Secondary structure		G	G	G	T	T	S		T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.									.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query Sequence		P	R	H	S	Q	W	Q	Q	V	S	L	N	A	L	V	E	E	T	L	V	L	V	Q	T	A	G	V	Q	A	R	V	D	.	.	.	.	.	.	.	.	F	I	S	E	L	D	N	E	L	S	P	I	N	A	D	R	E	L	L	K	Q	V	L	L	N	I	L	I	N	A	V	Q	A	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	G	S	I	N	P	N	C	N	V	L	E	V	I	K	D	G	Y	E	N	A	R	R	L	C	D	L	Y	Y	I	N	S	P	E	L	E	L	E	E	L	N	A	K	S	P	G	Q	P	I	Q	V	V	Y	V	P	S	H	L	Y	H	M	V	F	E	L	F	K	N	A	M	R	A	T	M	E	H	H	A	N
Template Known Secondary structure			B	T	T	B																										S												S	S	S	T	T	S																														S	T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.													.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	A	R	G	K	I	R	I	Q	T	W	Q	Y	S	D	S	Q	Q	A	I	S	I	E	D	N	G	C	G	I	D	L	S	L	Q	K	K	I	F	D	P	F	F	T	T	K	A	S	.	.	.	.	.	.	.	.	.	.	.	.	G	T	G	L	G	L	A	L	S	Q	R	I	I	N	A	H	Q	G	D	I
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		R	G	V	Y	P	P	I	Q	V	H	V	T	L	G	N	E	.	D	L	T	V	K	M	S	D	R	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	T	A	P	R	P	R	V	E	T	S	R	A	V	P	L	A	G	F	G	Y	G	L	P	I	S	R	L	Y	A	Q	Y	F	Q	G	D	L
Template Known Secondary structure		T	T													S	S	.										S									G	G	G	G		T	T	T	T							S	S			S				S	S		T	T													T	T
Template Predicted Secondary structure																		.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	S	L	P	G	Y	G	A	T	F	T	L	I	L	P	I	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	Y	S	L	E	G	Y	G	T	D	A	V	I	Y	I	K	A	L	S
Template Known Secondary structure							T	T	T										S	S	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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