Job Description Q06067 Confidence 62.25% Date Thu Jan 5 12:33:25 GMT 2012 Rank 138 Aligned Residues 145 % Identity 13% Template c2p7jA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus Resolution 2.25 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80									.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		S	A	V	L	S	E	K	E	K	K	L	S	A	V	V	N	L	L	N	Q	A	L	G	D	R	Y	D	L	Y	I	D	L	P	R	E	E	R	I	R	A	.	.	.	.	.	.	.	.	L	N	A	E	L	A	P	I	T	E	N	I	T	H	A	F	P	G	I	G	A	G	Y	Y	N	K	M	L	D	A	I	I
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	T	A	K	E	A	L	H	Q	L	A	Y	T	G	R	E	Y	N	N	I	Q	D	Q	I	E	T	I	S	D	L	L	G	H	S	Q	S	L	Y	D	Y	L	R	E	P	S	K	A	N	L	T	I	L	E	N	X	W	S	S	V	A	R	N	Q	K	L	Y	K	Q	I	R	F	L	D	T	S	G	T	E	K
Template Known Secondary structure																																			T										S																															T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
							113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.												.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	T	Y	A	P	S	A	L	Y	Q	N	N	V	G	V	T	I	A	A	D	H	P	G	R	E	V	M	R	T	N	T	P	L	V	Y	S	G	.	.	.	.	.	.	.	.	.	.	.	R	Q	V	R	G	D	I	L	N	S	M	L	P	I	E	R	N	G	E	I	L	G	Y	I	W	A	N	E
Query Conservation		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	I	K	Y	D	F	K	T	S	I	A	G	P	S	L	I	L	R	D	K	S	A	R	E	Y	F	K	Y	A	Q	S	L	D	N	E	Q	I	S	A	W	G	I	E	L	E	R	D	K	G	E	L	V	Y	P	L	S	P	S	L	R	I	L	X	P	I	S	V	N	D	V	R	Q	G	Y	L	V	L	N	V
Template Known Secondary structure								T	T	T	T										B		T	T	S								T	S		T	T													T	T				S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		177	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	D	I	R	R	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	E	Y	L	S	S	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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